Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq36 93.3 3e-14 seq77 91.5 1e-13 >seq36 Length=139094 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 34755 CCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGC 34814 ||||||| | || |||| ||||| ||| |||||| ||||| |||||||| || || Sbjct 92199 CCCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAG 92258 Query 34815 TGCGCTCATCGTCCA-GTTGCTTTCCGGCGAAGATCAGT-CGTTGCTGGTCTTGCGGCAC 34872 | || |||| || | |||||||||| || || |||| |||||||||||| | || | Sbjct 92259 TACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAAT 92318 Query 34873 CCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT-GCTATCGATTCATTGGCCTCGACAT 34931 || |||||||| | ||| || ||||| | | || | || | ||| || | Sbjct 92319 TCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTT 92378 Query 34932 CAACGGTT-ATG---GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| | | ||||| || || || ||||||||||| |||||||| Sbjct 92379 CAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 >seq77 Length=161124 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAA-TGTTATAGTC- 34806 |||| ||||| | | | ||||| ||| | || |||||| |||| |||| ||||| Sbjct 114519 TTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT 114578 Query 34807 CGATAGGCTGCGCTCAT--CGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 ||| || |||| ||| | |||| || || || || || |||| |||||||||||| Sbjct 114579 CGAGAG--TGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCT 114636 Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGG 34922 | || | || |||||||| | ||| || ||||| | | || || | || || Sbjct 114637 GGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGG 114696 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAG 34982 ||| || |||| || |||||||| || || || |||||||| || |||||||| || | Sbjct 114697 GCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATTATTG 114756 Query 34983 T 34983 | Sbjct 114757 T 114757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692335582423