Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq103 109 9e-19 seq58 98.7 2e-15 seq77 84.2 3e-11 >seq103 Length=203287 Score = 109 bits (120), Expect = 9e-19 Identities = 169/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTA---CTA----TTGATGTAGAA 146084 |||||||||| | ||||| || |||||||| || | || ||| | || || ||| Sbjct 14395 TGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCGAA 14336 Query 146085 CATAACGATACTATTCAAAATGTAAAAAATAAAATA-CAACTTAAAGAAGGCATTCCACC 146143 | | |||||||| ||||||| ||| || || ||| ||||||||| || || || Sbjct 14335 CCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCCCC 14276 Query 146144 CGATCAACAAAGACTCATTTTTGCAGGTAAA--CAATTAGATGATAATAGAACGTTAACA 146201 ||||||||||| || || ||||| || ||| ||| | || || ||||| | | Sbjct 14275 TGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGTCG 14216 Query 146202 GATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || |||||||| ||||| ||||| || | || || ||||| | ||||| ||||||| Sbjct 14215 GACTATAATATTCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGGTA 14158 >seq58 Length=124683 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 146049 ACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTA 146108 ||| | || || || || |||||| | || || || | | ||| |||||| |||| ||| Sbjct 62787 ACACTTACTGGCAAGACCATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAACGTA 62728 Query 146109 AAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCA 146168 || ||||||||| || || || ||||| ||||||||||| | | || |||||| Sbjct 62727 AAGTCCAAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGATATTTGCA 62668 Query 146169 GGTAAACAATTAGATGA-----TAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 || || ||||| || || || ||||| || | || |||||||||||||| |||| Sbjct 62667 GGCAAGCAATTGGAAGAGCTCGTAGAAGAACTCTATCGGACTATAATATACAAAAGGAAT 62608 Query 146224 CGACTATCCATTTAGTA 146240 | || | || || ||| Sbjct 62607 CTACCTTGCACTTGGTA 62591 >seq77 Length=161124 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| |||| || | || || || || |||||| |||| || || | | Sbjct 114750 TGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTCAG 114691 Query 146092 ATACTATTCAAAA--TGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCA 146149 |||||||| | || ||| || || |||||| || ||||| ||||| || || || Sbjct 114690 ATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACCA 114631 Query 146150 ACAAAGACTCATTTTTGCAGGTAAACAATTAGATG--ATAATAGAACGTTAACAGATTAT 146207 ||| | | ||||||||||||||||| || || | || | | || | ||| || Sbjct 114630 GCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCAC-TCTCGAGACTAC 114572 Query 146208 AATA-TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 || | | ||||| || || ||| |||| || || ||||| |||| || || | |||| Sbjct 114571 AACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACGTCTAAGGGGTGGAATGCAAAT 114512 Query 146267 ATT 146269 ||| Sbjct 114511 ATT 114509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165250231640