Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq36 140 2e-28 seq77 116 3e-21 >seq36 Length=139094 Score = 140 bits (154), Expect = 2e-28 Identities = 172/231 (74%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 29564 CCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGG 29623 |||||||||||| ||||| ||||| || || || |||||||| ||||| || | || | Sbjct 92199 CCCTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAG 92258 Query 29624 TGCGAGAATCATC-GAGTTGTTTGCCAGCATATATC-AATCTTTGCTGATCCGGCGGAAT 29681 | ||| ||| || ||||| || |||||| ||||| || | |||||| || || ||||| Sbjct 92259 TACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAAT 92318 Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTACTT 29740 || || |||||||||| || |||||| || || | ||| || ||| | || |||| Sbjct 92319 TCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTT 92378 Query 29741 CAAGAGTTATA----GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| | || ||||| || | || || ||||||||||||||| Sbjct 92379 CAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Score = 102 bits (112), Expect = 6e-17 Identities = 169/240 (70%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| ||||| ||||| || || || |||||||| ||||| || | | Sbjct 91780 CCACCCCTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGGA 91839 Query 29620 A--------TGGTGC-GAGAATCATCGAGTTGTTTGCCAGCATATATCAAT-CTTTGCTG 29669 | | || || | | ||||| || |||||| ||||||| | |||||| Sbjct 91840 AATCACGACTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTTGCTG 91899 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAG 29728 || || || || || || || ||||||| || | ||||| | || | |||||| | Sbjct 91900 GTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTGTCTG 91959 Query 29729 AAAGTTCTACTTCAAGAGTTA-TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || ||||||||||| | | || ||||| || | || || ||||||||||||||| Sbjct 91960 AAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGCATT 92019 >seq77 Length=161124 Score = 116 bits (128), Expect = 3e-21 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAA-TGTTATAATCCG 29617 ||| ||||| | ||| | ||||| || || || || || ||||||| |||| || || Sbjct 114520 TCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT- 114578 Query 29618 CAATGGTGCGAGAAT--CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | |||||| || | || | ||||| || ||| | ||||| | |||||| || || Sbjct 114579 CGAGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGG 114638 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT--ACAGTGTCAGAAAGT 29733 |||||||| || |||||||||| || ||||||| |||| | ||| || || | Sbjct 114639 GGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGC 114698 Query 29734 TCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||||||||| || || || ||||| | || || || |||||||||||| Sbjct 114699 TCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114752 Score = 107 bits (118), Expect = 1e-18 Identities = 169/237 (71%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAA--TGTTATAATCC 29616 ||| ||||||| ||| | ||||| ||||| || || || ||| ||| |||| || || Sbjct 113826 TCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTCT 113884 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCA----GCATATATCAATCTTTGCTGATC 29672 | | || ||| ||| || | ||||| ||| ||| | ||||| | |||||| || Sbjct 113885 GAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGTC 113943 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732 || |||||||| || |||||||||| || ||||||| ||| | |||||| || | Sbjct 113944 TGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGG 114003 Query 29733 TTCTACTTCAAGAGTTA--TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||||| | | || || ||||| | || || || |||||||||||| Sbjct 114004 CTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 Score = 105 bits (116), Expect = 5e-18 Identities = 166/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 29567 TCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGC 29626 ||||||||| |||||| ||||| || || || ||||||||||| || || | | |||| Sbjct 113597 TCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAGAGAGTGC 113656 Query 29627 GAGAATCATCGAGTTGTTTGCCAGCAT---ATATCAATCTTTGCTGATCCGGCGGAATAC 29683 || ||| || | ||||| | ||| | ||||| | |||||| || || ||||||| Sbjct 113657 GACCATCTTCCAACTGTTTACTCCCATGCAAAATCAAACGTTGCTGGTCTGGGGGAATAC 113716 Query 29684 CCTCTTTGTCTTGTA-ATTTTTG-TTTGACAGTT----TCTACAGTGTCAGAAAGTTCTA 29737 | || |||||||||| || || | ||||||||| ||| | || || | || | Sbjct 113717 CTTCCTTGTCTTGTATATCTTCGACTTGACAGTTCGGAACTATA--TTCTGAGGGCTCCA 113774 Query 29738 CTTCAAGAGTT--ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| | | || || ||||| | || || || |||||||||||| Sbjct 113775 CTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 113826 Score = 105 bits (116), Expect = 5e-18 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAA--TGTTATAATCC 29616 ||| ||||||| ||| | ||||| ||||| || || || ||||||| |||| || || Sbjct 114290 TCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTCT 114349 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | || ||| || || | ||||| |||||| | ||||| | ||| || || || Sbjct 114350 -CGAGAGTACGACCATGCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGGG 114407 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT--ACAGTGTCAGAAAGTT 29734 |||||||| || |||||||||| | || | | | ||||| | | |||||| || | | Sbjct 114408 GGAATACCTTCCTTGTCTTGTA-TCTTCGACTTAAAGTTTTTCAATAGTGTCTGAGGGCT 114466 Query 29735 CTACTTCAAGAGT-TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||||||||| || || || ||||| | || || || ||||| |||||| Sbjct 114467 CCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAA--TGTTATAATCC 29616 ||| ||||||| ||| | ||||| ||||| || || || ||| ||| |||| || || Sbjct 114060 TCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTCT 114118 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGC-CAGCATATATCAATCTTTGCTGATCCGG 29675 | | || ||| ||| || | ||||| | | ||| | ||||| | |||||| || || Sbjct 114119 -CGAGAGTACGACCATCTTCCAACTGTTTACGCTGCAAA-ATCAAACGTTGCTGGTCTGG 114176 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAG--TGTCAGAAAGT 29733 |||||||| || |||||||||| || |||||| | || || |||| || | Sbjct 114177 GGGAATACCTTCCTTGTCTTGTA-TTGGGACTTGACAAGTCCTCCAAGCTGTCTGAGGGC 114235 Query 29734 TCTACTTCAAGAGTTA-TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||||||||| | | || || ||||| | || || || |||||||||||| Sbjct 114236 TCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218650701497