Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq17 383 2e-101 >seq17 Length=139726 Score = 383 bits (424), Expect = 2e-101 Identities = 720/1035 (70%), Gaps = 35/1035 (3%) Strand=Plus/Plus Query 158766 AGAGGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTG-TTGG 158824 ||||| | || || || | || || ||||| ||||| ||||| || || ||| |||| Sbjct 27222 AGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGG 27281 Query 158825 CTGGTCTGG--------ACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGG 158876 ||||| || |||| | ||| | || | | || | ||| |||| |||| Sbjct 27282 ATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGG 27337 Query 158877 CTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTT 158936 |||| || || ||||| | ||| |||||||| ||||| | ||| |||| ||| | Sbjct 27338 TTTACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTA 27396 Query 158937 GAGGG-TGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTC 158995 || || || || ||| | || || ||||| || | || || || |||||| || || Sbjct 27397 GAAGGATGTAA--TTTTTAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTC 27454 Query 158996 TCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGG 159055 | || || | ||||| || || |||||||| ||||| || ||| ||| |||| Sbjct 27455 ATTACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGG 27513 Query 159056 GGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCT-AATTGGTTTCATGCTT- 159113 || | |||| ||| || | || ||||| |||| | ||| ||||| || || Sbjct 27514 AGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTA 27571 Query 159114 CGCCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCT 159173 || || |||||| | ||| | | | || || | || || ||||| || || || || Sbjct 27572 CGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCG 27631 Query 159174 GGTCCTATTGCTGTTTT-TGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTG 159232 || || ||||| ||||| | |||| | || ||||| || |||||||| || | ||||| Sbjct 27632 GGACCAATTGCAGTTTTGTTTCAG--TATTTCTTATTTATCCACTTGGACAAGCTAGTTG 27689 Query 159233 GTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGG 159292 ||||| ||||| ||||| || || || || || || || | | || | ||||| Sbjct 27690 GTTTT--GCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGG 27746 Query 159293 GTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGG 159352 ||||| || ||||| |||| || |||||||||||||| |||||||| || || ||||| Sbjct 27747 CTTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGG 27806 Query 159353 AGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGA 159412 |||| | | | ||||||||||| | || || |||||||| |||| || ||||| || Sbjct 27807 AGCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGA 27866 Query 159413 ACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGT 159472 | || || || || | || ||| |||| ||| || || |||||||| ||||| Sbjct 27867 AGCTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGT 27926 Query 159473 CACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCT 159532 || || || || || ||||| || || || || |||| |||||||| || | ||||| Sbjct 27927 TACAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCT 27983 Query 159533 TCATTTCTTT--ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATT 159590 ||||||||| ||| | |||||||| |||| || |||||||| |||||| ||| Sbjct 27984 ACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATT 28043 Query 159591 ATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCA 159650 || || ||||| | ||| | ||||| || |||||||| |||||| | | || ||| Sbjct 28044 ATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCA 28103 Query 159651 GAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGT 159710 || ||||||||||||||||| || || || || || | || || |||||||| || | Sbjct 28104 GAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGA 28163 Query 159711 GCTTGGTTGGCACCTGCTGA-TCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCT 159769 || ||| ||||| | || |||||| |||||||| || | |||||||| || ||| | Sbjct 28164 GCATGGATGGCAACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTT 28222 Query 159770 ACCAAGAGGTAACGC 159784 |||| | || || || Sbjct 28223 ACCACGTGGAAATGC 28237 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 158217 ATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTG 158276 ||||||| || |||| ||||| |||||| |||| | ||| | ||| |||||| | | Sbjct 56914 ATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTGTAGAG 56973 Query 158277 CTGGT--GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGA 158334 | || || || ||| | || ||||| ||| | || ||| || ||||| ||| Sbjct 56974 CAGGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAGAAGTAGATCAATCTGA 57033 Query 158335 TCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATA 158394 |||||| || |||| ||||||||| | |||||||||||| || || ||||| ||||| Sbjct 57034 TCAGTCCTTT-TAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGTTGCATA 57092 Query 158395 TCCAACATCTGAT 158407 ||| || ||| || Sbjct 57093 TCCTACTTCTAAT 57105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545272802537360