Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq17 379 2e-100 >seq17 Length=139726 Score = 379 bits (420), Expect = 2e-100 Identities = 716/1027 (70%), Gaps = 31/1027 (3%) Strand=Plus/Plus Query 178939 TTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTG-TGGGTTGGTCTGG 178997 |||||| | | ||||| ||||| || || ||||||||||| ||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 178998 ACTCC--TACTTCTTCCCACTGCTTAT---CTTGCCATTGGCGGTTGGCTTACTGGGACA 179052 | ||||| |||| | | || || ||| | |||| |||| |||| || ||| Sbjct 27291 TTTGAATTACTT-TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACA 27349 Query 179053 GCTTTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAAC 179112 |||| ||||| |||||| || |||||| | ||| ||| ||| | ||||| ||| Sbjct 27350 ACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAAT 27408 Query 179113 TTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 179172 ||| | || || || || || | ||||| || |||||| || ||| | | ||| || Sbjct 27409 TTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTT 27464 Query 179173 T--GGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGA 179230 | |||| || || |||| || |||| | ||||| ||| |||| || |||||| Sbjct 27465 TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGA 27524 Query 179231 ATTTCGTGGCTCTCCACGGTGCCTTCGCCCT-AATTGGATTCATGCTT-CGTCAGTTTGA 179288 || ||| | || ||||| || | | ||| || || || || ||||| ||||| Sbjct 27525 CATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGA 27582 Query 179289 ACTGGCACGTCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGC 179348 | | ||| | | | || || | || || ||||| || |||||| | || || ||||| Sbjct 27583 AATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGC 27642 Query 179349 CGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCC 179408 || || ||| |||||||| || || |||||||||||| | |||||||| |||| || Sbjct 27643 AGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCC 27699 Query 179409 ATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTT-TCTTACAAGGTTTCCACAACT 179467 ||||| ||||| || ||||||||||| || ||| | || ||||| ||||| |||| Sbjct 27700 TAGTTTTGGAGTTGCAGCTATCTTTAGATT--TATTTTATTTTGCAAGGCTTCCATAACT 27757 Query 179468 GGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCT 179527 |||| | || || || || |||||||| ||||| || || || ||||| || | | | Sbjct 27758 GGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGT 27817 Query 179528 CTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACA 179587 ||||||||||||| ||||||||| ||||| || | ||||||||| ||| || || | Sbjct 27818 GCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATA 27877 Query 179588 CATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACC 179647 | || | ||| || | || ||| || || || ||||| ||||||||||| || | Sbjct 27878 CTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATC 27937 Query 179648 GTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTT- 179706 | |||||||| || || || || ||| | ||| ||||| | ||| | || |||||| Sbjct 27938 G-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTG 27994 Query 179707 -AAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGC 179765 | ||| ||||| || || | || | ||| ||||||||| || || || || || Sbjct 27995 AATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGC 28054 Query 179766 TCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGA 179825 | ||| | ||||| |||||||| || |||||| | | || ||||| ||||| || Sbjct 28055 ATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGA 28114 Query 179826 GTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGC 179885 || || || || ||||| || || | || || |||||||| || | || ||| |||| Sbjct 28115 ATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGC 28174 Query 179886 ACCTGCTGA-TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTA 179944 | | || ||||||||||||||| || | |||||||| || || |||| |||| | Sbjct 28175 AACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTGGAA 28233 Query 179945 ACGCACT 179951 | || || Sbjct 28234 ATGCCCT 28240 Score = 109 bits (120), Expect = 7e-19 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 138518 TTGACTGTGCTGATGA-TCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||| ||| ||||||| ||| || || | ||||| ||||| ||| ||| | ||||| Sbjct 56898 TTGAGTGTCCTGATGAATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTC 56957 Query 138577 CCCTACTCCTGTCGTGCTGGT--GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAA 138634 ||||| || ||| | || || ||||||||||| || || || ||| | | |||||| Sbjct 56958 CCCTATTCTTGTAGAGCAGGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAG 57017 Query 138635 CTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCA 138694 |||||||| ||||| ||||| || | |||||||| ||| | |||||||||| | Sbjct 57018 AAGTAGATCAATCTGATCAGTCCTT-TTAGATGATGATCAAGTAAAAGCAGGATTTGTAC 57076 Query 138695 TGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAAC 138754 | || || || ||||| || || || || | |||| |||| | |||| || | Sbjct 57077 TAACCTGTGTTGCATATCCTACTTCTAATGCAACAATTTTAACTCATCAAGAAGAATCAT 57136 Query 138755 TATACT 138760 |||||| Sbjct 57137 TATACT 57142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605666314211720