Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq103 188 1e-42 seq36 168 1e-36 seq58 143 5e-29 seq77 107 4e-18 >seq103 Length=203287 Score = 188 bits (208), Expect = 1e-42 Identities = 186/239 (78%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || || | || || ||||||| || ||||| || || |||||||| || | Sbjct 14158 TACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCG 14217 Query 82642 ATAGAATTCTACCGTCTTCTAGTTG--TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG 82699 | ||| |||| |||||||| ||||| ||| |||||||| || || ||||||||||| || Sbjct 14218 ACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGG 14277 Query 82700 AGGTATTCCTTCCTTATCTTG-AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 ||||| ||||| |||||||| |||||||| ||| |||||||| || ||||| ||||| Sbjct 14278 GGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTT 14337 Query 82759 CTACTTCCAAAGTTA-------TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || |||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 14338 CGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 >seq36 Length=139094 Score = 168 bits (186), Expect = 1e-36 Identities = 179/232 (77%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649 |||||||||| || ||||| || ||||| || || || |||||||| || || ||| | Sbjct 92201 CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTA 92260 Query 82650 CTACCGTCTTCTA-GTTGTTTTCCAGCAAAGATTAGT-CTTTGTTGATCTGGAGGTATTC 82707 | ||| ||||||| |||| ||||||||||| || | | ||| || |||||||| |||| Sbjct 92261 CGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTC 92320 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTT-TCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||| ||||| ||||| | || |||||| ||||| ||||| ||| || ||||| Sbjct 92321 CTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCA 92380 Query 82767 AAAGTT----ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | |||| ||||||||| || | ||||||||||||||||||||| || Sbjct 92381 AGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATTCTT 92432 Score = 118 bits (130), Expect = 2e-21 Identities = 176/244 (72%), Gaps = 18/244 (7%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| ||||| || ||||| || ||||| || || || |||||||| || | Sbjct 91779 ACCACCCCTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTG- 91837 Query 82643 TAGAATTC-----TA---CCGTCTTCT----AGTTGTTTTCCAGCAAAGATTAGT-CTTT 82689 ||| || || | | ||| ||||| ||||||||||| || | | || Sbjct 91838 --GAAATCACGACTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTT 91895 Query 82690 GTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTA 82748 | || |||||||| ||||||||||||||||| ||||| | || || || ||||| || Sbjct 91896 GCTGGTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTG 91955 Query 82749 TCATTAGGTTCTACTTCCAAAGT-TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || ||| || ||||| | ||| || ||||||||||| | ||||| ||||||||||| Sbjct 91956 TCTGAAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTG 92015 Query 82808 CATT 82811 |||| Sbjct 92016 CATT 92019 >seq58 Length=124683 Score = 143 bits (158), Expect = 5e-29 Identities = 166/222 (75%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTAC--CG---T 82656 || ||||||| |||||||| || ||||||||||| || |||||| |||| | || | Sbjct 62592 ACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCT 62651 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 |||| | ||| || || ||||| || | | |||||||| ||||| ||||| ||||| | Sbjct 62652 CTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGT 62711 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 |||| || || | ||||| |||||||| || || ||| || ||||||||||| || | Sbjct 62712 CTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGG 62771 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 ||||||| || | |||| ||| || || |||| ||||| Sbjct 62772 TCTTGCCAGTAAGTGTCTATAC----ATTTGAATTAGTATAT 62809 >seq77 Length=161124 Score = 107 bits (118), Expect = 4e-18 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA-TATTATAATCAGA 82642 || || || | ||| | || ||||| |||||||| || || || | | || || || Sbjct 114521 CCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCTCG 114580 Query 82643 TAGAATTCTACCGT--CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 ||| | | ||| | |||| | ||||| || ||||| || | | ||| || ||||| Sbjct 114581 -AGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGG 114639 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA--TTTTCAATCGTATCATTAGGTT 82758 || || |||||||| ||||| ||||| | || ||| || ||||| ||||| || | Sbjct 114640 GGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCT 114699 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | ||||| | ||| || ||||| || || | |||||||| ||||||||||||||| Sbjct 114700 CCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATTATT 114755 Score = 96.9 bits (106), Expect = 7e-15 Identities = 166/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTA--TATTATAATCAG 82641 || || |||| ||| | || ||||| |||||||| || || || | | || || || | Sbjct 113827 CCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTT-TGAAGCTGTTGTAGTCTG 113885 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCA----GCAAAGATTAGTCTTTGTTGATCT 82697 | ||| | | ||| ||||| | ||||| ||| ||||| || | | ||| || ||| Sbjct 113886 AGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGTCT 113944 Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || || |||||||| ||||| ||||| | || ||| |||||| || || || Sbjct 113945 GGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGGC 114004 Query 82758 TCTACTTCCAAAGTTATC--GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| | || | | ||||| || || | |||||||| |||||||||||| Sbjct 114005 TCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/239 (70%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 82584 CCTCCTCT-CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 || ||||| |||||||| || ||||| |||||||| || || || || || || || || Sbjct 113589 CCACCTCTTCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGA 113648 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTC---CA-GCAAAGATTAGTCTTTGTTGATCTG 82698 ||| | | ||| ||||| | ||||| | || ||||| || | | ||| || |||| Sbjct 113649 GAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGCAAA-ATCAAACGTTGCTGGTCTG 113707 Query 82699 GAGGTATTCCTTCCTTATCTTGAAT--CTTTGCTTTTACATTTTCAATCG-TATCATTAG 82755 | || || |||||||| ||||| || ||| | || ||| || | | ||| | || Sbjct 113708 GGGGAATACCTTCCTTGTCTTGTATATCTTCGACTTGACAGTTCGGAACTATATTCTGAG 113767 Query 82756 GT-TCTACTTCCAAAGTTATC--GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || ||||| | || | | ||||| || || | |||||||| |||||||||||| Sbjct 113768 GGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 113826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825728179663