Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq74 150 4e-31 seq89 123 6e-23 seq51 95.1 3e-14 seq99 93.3 1e-13 seq72 89.7 1e-12 >seq74 Length=163707 Score = 150 bits (166), Expect = 4e-31 Identities = 332/488 (68%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 110518 CTTCTTGCTTTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTT 110576 ||||||| |||||| || || | || || ||||||||||| ||||||||| || || Sbjct 152124 CTTCTTG-TTTCTTGCTCACTATGACGGAAGACTCTATTGAAGGCATTTATGATACT-TT 152067 Query 110577 AAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCAC-GTTCATGATA 110634 |||| |||| | |||||||||| |||| || ||||| ||| | ||||| || | Sbjct 152066 GAAGAGCTGTGCTGTGATTTCTAAAAGTGCTGGCGGTATTGG-ATTGGCAGTTCACGACA 152008 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCA- 110693 |||| | | | | |||| | | || || |||| | ||| ||||||| Sbjct 152007 TTCGAGCTACCAAATCGTATATTCGAGGTACCAATGGAACTTCCAATGGCATTGTTCCCT 151948 Query 110694 ATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAAT 110750 ||| | |||| || || || ||||| | |||||| ||||||| || |||||||| Sbjct 151947 ATGCTTCGAGTATTTAATGATACTGCGAGATATGTCGATCAAGGAGGAGGAAAGAGAAAA 151888 Query 110751 GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTT 110810 || | |||||||| ||| | || ||||||||| | || ||||| || ||||| | Sbjct 151887 GGAGCTTTTGCTATTTATTTGGAGCCTTGGCATGCCGACCATTTTGAGTTTTTAGATTTG 151828 Query 110811 CGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATT 110870 | || ||||| ||| ||||| | ||||||| ||||||||||||| | ||| || Sbjct 151827 AGAAAGAATCATGGAAAGGAAGAGAATCGAGCACGAGATTTATTTTATGGTTTATGGGTT 151768 Query 110871 TCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 | ||||| || ||||| || || || | ||| | |||| | | | ||||| || Sbjct 151767 CCCGATTTGTTTATGAAGCGAGTAGAAAGAGATGAAAAGTGGAGTTTATTTTGTCCCAAT 151708 Query 110931 CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 |||| || | | ||| | ||| ||| |||||| | ||||| ||||| ||| Sbjct 151707 GAAGCTCCAGGATTGGCAGATTGTTGGGGAGAAGCTTTTGAACAACTTTATGAAAAGTAT 151648 Query 110991 GAAAAAGA 110998 ||||| || Sbjct 151647 GAAAAGGA 151640 >seq89 Length=114172 Score = 123 bits (136), Expect = 6e-23 Identities = 155/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 131799 AAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAA 131858 ||||||| || || ||| | | |||||||||| || || ||| || |||| | Sbjct 97173 AAAAGAAGGCGGATTGGTCGTTGAAATGGATTCGAG-TG-TTCTCATAGTTTTGCCGAGC 97116 Query 131859 GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCT 131918 | || || |||||||| || ||||| ||||||||||| ||| |||| ||| | || | Sbjct 97115 GTCTGGTTGCTTTTGCAGCGGTCGAAGGGATATTCTTTTCTGGTTCTTT-TGTTCCATAT 97057 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 ||||| | ||||| || || |||||||||||||| | || |||||| | || || || Sbjct 97056 TTTGGTTGAAGAAACGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCAC 96997 Query 131979 GAGATGAAGCATTGCATACTGAATTTGCT 132007 ||||||||| |||||| |||||||||| Sbjct 96996 GAGATGAAGGCTTGCATTGTGAATTTGCT 96968 >seq51 Length=79067 Score = 95.1 bits (104), Expect = 3e-14 Identities = 174/254 (69%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 304881 ACAA-TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAG 304939 |||| ||||||||||||| |||| || | ||| | || || ||| |||| | | Sbjct 59316 ACAACTTTACAATATCATGTTGCGACGTATATGAACAACGAGATTCCTGGCCTGCCTCGT 59375 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || |||| | ||||| | || || || ||||| ||||| | ||||| || || Sbjct 59376 TCACTTCAACGTTCTGGTCGTCCGTTGAAAAGTATTTCTCAACGATTAAAAGGAAAGGAA 59435 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 || | |||||||| ||| | ||||||||||| || || ||| |||||||| ||| || Sbjct 59436 GGAAGAATTCGAGGAAATTTGATGGGAAAACGAGTCGACTTTTCTGCAAGAACTGTTATT 59495 Query 305060 ACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAA 305119 || || ||| | | ||| || | ||||| | || ||||| | ||||| | || Sbjct 59496 ACTCCAGATCCGAATATTCGTTTGGATGAAGTTGGTGTTCCTAAAAGTATTGCCATGAAC 59555 Query 305120 CTAACATTTCCAGA 305133 |||||| ||| || Sbjct 59556 TTAACATATCCTGA 59569 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/159 (75%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGT-CAA 305388 ||||| || ||||| ||||| || | || ||||||||||| |||| ||| || | | Sbjct 59760 GTTCTTTT-AATAGACAACCTTCCTTACACAAAATGTCTATTATGGGACATCGTGTTCGA 59818 Query 305389 AGTATTATCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | | || | | ||| | |||| || |||||| || ||| | || |||||||| | Sbjct 59819 ATTCTT--CCGTATTCAACATTCCGCTTAAATTTATCTGCCACAAGTCCATATAATGCCG 59876 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | ||||||||||||||||||||| |||| |||||||||| Sbjct 59877 ACTTTGATGGAGATGAAATGAATTTGCACGTACCTCAAT 59915 >seq99 Length=53891 Score = 93.3 bits (102), Expect = 1e-13 Identities = 321/491 (65%), Gaps = 10/491 (2%) Strand=Plus/Plus Query 279809 TTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCTCAT 279868 ||||| | || ||||| || | ||||| || ||| | ||| || || ||| Sbjct 22247 TTTATCAACAAGGAACTTATTCTGTTTTCATTTTCTGACAATGCTCGATCCATACCTTCC 22306 Query 279869 TTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAA 279928 | || ||||| ||||||| || || ||| | | || | || || |||||||| Sbjct 22307 GTTATCGATGGACTGAAACCGAGTCAACGGAAGGTGTTGTTTGGATGCTTTAAAAGAAAC 22366 Query 279929 TTGGTAAAGGAAATTCGTGTTGCTCAGTT--AGCAGGTTATGTTTCAGAACATGCAGGTT 279986 | | |||||| || ||||| || || ||| |||||| | ||||| |||||| | Sbjct 22367 T-GACAAAGGATATCAAAGTTGCACAATTCTAGCTGGTTATATCGCAGAAAATGCAGCAT 22425 Query 279987 ATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT-ATG 280045 |||| || || ||| ||||||| | ||||||||||| | || ||| ||||| || Sbjct 22426 ATCACCATGGAGAAATGTCTCTTATGGCAACTATTGTAGGTTTGGCACAAAATTTTGTTG 22485 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAAT 280105 ||| | | | |||| || | || ||||||||||||| ||||| | || | Sbjct 22486 GCTCCTGCAATATCAAATTTGTTGGTGCCTTCTGGTCAATTTGGTACTCGTCTACAAGGT 22545 Query 280106 GGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTT--TCAGATATTACAAACA 280163 ||||||||| || ||||||||| || |||| | ||| || | ||||| | Sbjct 22546 GGAAAAGATGCTGCATCTGCTCGTTATAT-TTTACAAGACTTGCTCCG-CATTACTAGGT 22603 Query 280164 AGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTA 280223 | || ||| | || || | || | | |||| | ||||| || || || | | Sbjct 22604 ATTTGTTTCCGGAATCAGACGACGCAGTACTCGAGTACTTGGAGGAAGACGGACTCTCCA 22663 Query 280224 TTGAACCAACATATTA-TGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGA 280282 ||||||| | || || ||| ||| | || ||| | ||| | || || || ||| |||| Sbjct 22664 TTGAACCCAATTACTACTGC-CCAGTCATTCCTCTCATTTTAGTCAACGGCGCTGAAGGT 22722 Query 280283 ATTGGAACAGG 280293 ||||| || || Sbjct 22723 ATTGGTACTGG 22733 >seq72 Length=85273 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 ||| | |||||||| |||||||| | ||||||||| || ||| ||| ||| || Sbjct 75838 ATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATT---GAGTCTTCTGCTTCGTTTGCT 75782 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 | | || |||||||||||| || ||||| ||||| || || ||| | || ||| | Sbjct 75781 GAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCCTTTTGTTCC 75722 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 || |||||| | || ||| | || | ||||| || | |||| ||||| | | || Sbjct 75721 ATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAACGAGCTGATT 75662 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTT 132004 || || ||||| | |||||| |||||| Sbjct 75661 TCAAGGGATGAGGGTTTGCATTGCGAATTT 75632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811020893437