Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq77 131 2e-25 >seq77 Length=161124 Score = 131 bits (144), Expect = 2e-25 Identities = 178/241 (74%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAA-TGTTGTAGTCG 134543 |||| || || || || || || | ||| || || || |||||||||| |||||||||| Sbjct 114519 TTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT 114578 Query 134544 CCAACGGTGTGAGAGT--CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGG 134601 | | | || || | | || | |||||| ||||||||||||||||| ||||| || | Sbjct 114579 CGAGAG-TGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTG 114637 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTC-CAAT-GTGTCGGACGA 134659 | || || ||||| || ||||| || || ||||| || || |||| || || || | Sbjct 114638 GGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGG 114697 Query 134660 TTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT-TTGT 134718 ||||| || ||||||||||| || || || | ||| || ||||| || |||||| |||| Sbjct 114698 CTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATTATTGT 114757 Query 134719 T 134719 | Sbjct 114758 T 114758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAA--TGTTGTAGTC 134542 |||| || || || || || || | ||| || || || |||||||||| |||||||||| Sbjct 114289 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTC 114348 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | | | || | || | |||||| || |||||| ||||||| || || || || Sbjct 114349 TCGAGAG-TACGACCATGCTCCAACTGTTTCCCAGCAAAA-TCAAACGTTGTTGGTCTGG 114406 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATT 134661 || || ||||| || ||||| || || || | | |||| ||||| || | | Sbjct 114407 GGGAATACCTTCCTTGTCTTGTATCTTCGACTTAAAGTTTTTCAATAGTGTCTGAGGGCT 114466 Query 134662 CCACGTCGAGAGT-AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||| || ||||| |||||| || || || | ||| || ||||| ||||||||| Sbjct 114467 CCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAA--TGTTGTAGTC 134542 |||| || || || || || || | ||| || || || |||||| ||| |||||||||| Sbjct 113825 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTC 113883 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC----TGCAAAAATCAAACGCTGCTGAT 134598 | || || || || | |||||| || ||||||| ||||||| ||||| | Sbjct 113884 TGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAAA-TCAAACGTTGCTGGT 113942 Query 134599 CGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACG 134658 | || || || ||||| || ||||| || || ||||| || || | ||||| || | Sbjct 113943 CTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGG 114002 Query 134659 ATTCCACGTCGAGAG--TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || |||| | |||| || || || | ||| || ||||| || |||||| Sbjct 114003 GCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAA--TGTTGTAGTC 134542 |||| || || || || || || | ||| || || || |||||| ||| |||||||||| Sbjct 114059 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTC 114117 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGC-CTGCAAAAATCAAACGCTGCTGATCGG 134601 | | | | || || || | |||||| | |||||||| ||||||| ||||| || | Sbjct 114118 TCGAGAG-TACGACCATCTTCCAACTGTTTACGCTGCAAAA-TCAAACGTTGCTGGTCTG 114175 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC--CGCGTCCAATGTGTCGGACGA 134659 | || || ||||| || ||||| | || ||||| | ||||| |||| || | Sbjct 114176 GGGGAATACCTTCCTTGTCTTGTA-TTGGGACTTGACAAGTCCTCCAAGCTGTCTGAGGG 114234 Query 134660 TTCCACGTCGAGAGT-AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| |||||| || || || | ||| || ||||| || |||||| Sbjct 114235 CTCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397660854840