Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq17 470 2e-127 >seq17 Length=139726 Score = 470 bits (520), Expect = 2e-127 Identities = 721/1000 (72%), Gaps = 31/1000 (3%) Strand=Plus/Plus Query 159391 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTG-TGGGTTGGTCTGGACTCC--TACTT 159447 ||||| ||||| ||||| ||||||||||| ||| | || ||||| || | ||||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 159448 CTTCCCACTGCTTATA---TGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACG 159504 |||| | | || | | ||| | |||| |||| |||| || || ||||| | || Sbjct 27303 -TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTTGTT-ACT 27360 Query 159505 AGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCA 159564 |||||| || || ||| | ||| ||| || | ||||| ||||||| | || || Sbjct 27361 TCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCT 27419 Query 159565 GCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCTG 159622 || || |||| ||||| || |||||| || ||| | | ||| ||| |||| || | Sbjct 27420 GCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCAG 27476 Query 159623 AGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTC 159682 | ||||||| || || | ||||| ||| ||||||| | ||| | ||| ||| Sbjct 27477 AAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTT 27536 Query 159683 TCCACGGTGCATTCGCTCTCA-TAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTA 159741 | || ||||| || | | | |||||||| | |||| ||||||||||| || | || Sbjct 27537 TACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGATTA 27595 Query 159742 GTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT-TGTCAG 159800 || || || | || || ||||| || || || || || || ||||| ||||| | |||| Sbjct 27596 GTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTTCAG 27655 Query 159801 CGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 159860 |||| ||||| |||||||| || || || ||||| |||| |||||||| || || Sbjct 27656 --TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAGT 27711 Query 159861 AGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCC 159920 ||||| ||||||||||| | || || | || || ||||| |||||||| | || || Sbjct 27712 TGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCC 27770 Query 159921 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGG 159980 |||||||||||||| |||||||| ||||| ||||||||| | ||||| || || ||||| Sbjct 27771 ATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGG 27830 Query 159981 TGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTT 160040 || |||||||| || || || ||||||||||| ||| || || || || | || || Sbjct 27831 AGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTT 27890 Query 160041 TGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCA 160100 | || || ||| |||||| |||||||| ||||| || || || || || ||||| || Sbjct 27891 TACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACA 27949 Query 160101 GATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATT--TTTTCATGTTGTTTGTG 160158 || || |||||||| |||||||| || | ||||| |||| ||| ||| | |||||| Sbjct 27950 AAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTG 28007 Query 160159 CCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGT 160218 || |||| || |||||||| |||||||| ||||| || ||||| || || | ||| Sbjct 28008 CCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGT 28067 Query 160219 GCTTACGATTTCGTGAGTCAGGAGATTA-GAGCAGCAGAAGATCCTGAATTTGAGACCTT 160277 || || |||||||| ||| || |||| | || ||||| ||||| |||||||| ||||| Sbjct 28068 GCATATGATTTCGTTTCTCAAGA-ATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTT 28126 Query 160278 CTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA-TC 160336 || || || || | || | |||||||| | | || ||||||||| | || || Sbjct 28127 TTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTC 28186 Query 160337 AACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 ||||||||||||| ||| | ||||| ||||| || |||| Sbjct 28187 AACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACC 28225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573023161952400