Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq17 383 2e-101 >seq17 Length=139726 Score = 383 bits (424), Expect = 2e-101 Identities = 712/1023 (70%), Gaps = 33/1023 (3%) Strand=Plus/Plus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTG-TTGGCTGGTCTGG--------ACTT 161750 || || ||||| ||||| ||||| || || ||| |||| ||||| || |||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 161751 CTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCA 161810 | ||| |||| | | || | ||| |||| |||| |||| || |||||||| | Sbjct 27303 TTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGTACAACTTT-GTT 27357 Query 161811 ACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTAC 161869 || |||||||| |||||| | ||| ||| ||| | || || || || ||| | || Sbjct 27358 ACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAA--TTTTTAAC 27415 Query 161870 AGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCC 161929 || |||| | || || | |||||| || || | || || | ||||| || Sbjct 27416 TGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACC 27474 Query 161930 TGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGC 161989 || |||||||| ||||| | ||| ||| |||| || | |||| ||| || Sbjct 27475 AGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGC 27534 Query 161990 ACTCCATGGTGCCTTCGCCCT-AATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTC 162048 | |||||||| || | | ||| || || | | ||||| |||||| | ||| | Sbjct 27535 TTTACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGAT 27593 Query 162049 TTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT-TGTC 162107 | | || || | || || ||||| || || || || || || ||||| ||||| | || Sbjct 27594 TAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTTC 27653 Query 162108 AGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGG 162167 || | || ||||| || ||| | || || | |||||||||| ||||| ||||| Sbjct 27654 AG--TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGA 27709 Query 162168 GTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAAC 162227 || ||||| ||||||||||| | || ||| | ||||| |||||||||||||| | || Sbjct 27710 GTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAAT 27768 Query 162228 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCAC 162287 || |||||||||||||| |||||||| ||||| ||||||||| | | | |||||||| Sbjct 27769 CCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCAT 27828 Query 162288 GGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCG 162347 |||| || || |||||||| |||| || ||||| ||| || || || || | || Sbjct 27829 GGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCT 27888 Query 162348 TTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCG 162407 ||| | ||||| ||||| |||||||| ||||| || || || || || ||||| Sbjct 27889 TTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCA 27947 Query 162408 CAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATT--TTTTCATGTTGTTTG 162465 || || || ||| |||| |||||||| || | ||||| |||| ||| ||| | |||| Sbjct 27948 CAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTG 28005 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 162525 |||| |||| || |||||||| |||||||| ||||| || ||||| | || | | Sbjct 28006 TGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTAC 28065 Query 162526 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGT 162585 |||| || |||||||| ||| || | | || ||||| ||||| || |||||||| | Sbjct 28066 GTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCT 28125 Query 162586 TCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA-C 162644 | || ||||| || | || || |||||||| || | |||||| | ||| | || Sbjct 28126 TTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATT 28185 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 ||||| ||||| || ||| | |||||||| || ||| | || | || || ||||||||| Sbjct 28186 CAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAA 28244 Query 162705 TAA 162707 ||| Sbjct 28245 TAA 28247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 133/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 161123 CAGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCT 161182 || || || ||||||||||| ||||| |||| | ||| | |||||||||| | || Sbjct 56916 CAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTGTAGAGCA 56975 Query 161183 GG--TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACC 161240 || || || ||| | || ||||| ||| | | ||| |||||| || ||||| | Sbjct 56976 GGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAGAAGTAGATCAATCTGATC 57035 Query 161241 AGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATC 161300 ||||||| || |||||||| || | || | ||||| | | || ||||||||||||| Sbjct 57036 AGTCCTT-TTAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGTTGCATATC 57094 Query 161301 CTACT 161305 ||||| Sbjct 57095 CTACT 57099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559503181725400