Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq17 356 3e-93 >seq17 Length=139726 Score = 356 bits (394), Expect = 3e-93 Identities = 703/1012 (69%), Gaps = 31/1012 (3%) Strand=Plus/Plus Query 182361 TTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTG-TGGGTTGGTCTGG 182419 |||||| | | || || ||| | ||||| ||||||||||| ||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 182420 ACTCC--TACTTCTTCCCACTGCTTAT---CTTGCCATTGGCGGTTGGCTTACTGGGACA 182474 | ||||| |||| | | || || ||| | |||| |||| |||| || ||| Sbjct 27291 TTTGAATTACTT-TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACA 27349 Query 182475 GCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAAC 182534 |||| ||||| |||||| || || ||| | |||||||| ||| | ||||| ||| Sbjct 27350 ACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAAT 27408 Query 182535 TTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 182594 ||| | || || || || || | ||||| || |||||| || ||| | | ||| || Sbjct 27409 TTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTT 27464 Query 182595 T--GGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGA 182652 | |||| || || |||| || |||| | ||||| ||| |||| || | |||| Sbjct 27465 TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGA 27524 Query 182653 ATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT-GGTTTCATGCTTAGG-CAATTTGA 182710 || ||| | || ||||| || | | | | ||||| || ||| | |||||||| Sbjct 27525 CATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGA 27582 Query 182711 ACTTGCTCGCCTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 182770 | | || | | | ||||| ||||| || ||||| || |||||||| || || ||||| Sbjct 27583 AATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGC 27642 Query 182771 TGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCC 182830 || || || || || || || ||||| | ||||| | |||||||| | | Sbjct 27643 AGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTTGCTCCTA 27701 Query 182831 GTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTG 182890 || ||||| || || || ||||| || || | || || | || || ||||| ||||| Sbjct 27702 GT--TTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTG 27758 Query 182891 GACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAG 182950 ||| | || || |||||||||||||| |||||||| ||||| ||||||||| | | | Sbjct 27759 GACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTG 27818 Query 182951 TGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACAC 183010 ||||| ||||| | || ||||| |||||||| | ||||||||| ||| || || || Sbjct 27819 CGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATAC 27878 Query 183011 ATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCG 183070 || | ||| || | || || || || || ||||| ||||||||||| ||||| Sbjct 27879 TTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG 27938 Query 183071 TTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTT-- 183128 |||||||||||||| || || ||||| ||| ||||| | ||| | || |||||| Sbjct 27939 -TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGA 27995 Query 183129 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCT 183188 ||| | ||||| || || | || | ||| ||||||||| || || || ||||| Sbjct 27996 ATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCA 28055 Query 183189 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTA-GAGCAGCAGAAGATCCTGA 183247 | ||| | ||||| |||||||| || |||||| |||| | || ||||| ||||| || Sbjct 28056 TTAAATTTACGTGCATATGATTTCGTTTCTCAAGA-ATTACGTGCCGCAGAGGATCCAGA 28114 Query 183248 GTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGC 183307 || || || || || || || || | || || |||||||| || | || ||| |||| Sbjct 28115 ATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGC 28174 Query 183308 ACCTGCCGA-TCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 | | || ||||||||||||||| || | ||||| || || ||| |||| Sbjct 28175 AACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACC 28225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614616701121760