Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq17 360 3e-94 >seq17 Length=139726 Score = 360 bits (398), Expect = 3e-94 Identities = 687/984 (70%), Gaps = 35/984 (4%) Strand=Plus/Plus Query 175881 GATAGGTTTATCTTTA-TTGGCTGGTCTGGATT--ACTACTTCTTCCCACTGCTTAT--- 175934 ||| | ||| | |||| |||| ||||| || || | ||||| |||| | | || Sbjct 27261 GATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT-TTCCTTGTTCCTAAACC 27319 Query 175935 CTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGT 175994 || ||| | |||| ||| |||| || |||||||| || || |||||| || |||||| Sbjct 27320 CTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGT 27378 Query 175995 CTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCT 176054 | |||||||| ||| | || || ||| ||| | || || || || || | ||||| Sbjct 27379 TTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCA 27437 Query 176055 GATGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCTGAATCTCAGGGCGACTTCC 176112 || |||||| || ||| | | ||| ||| |||| || ||| |||| || || || Sbjct 27438 AATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCAGAAGCTCAAGGTGATTTTA 27494 Query 176113 AGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTC 176172 | ||| ||| ||||||| | ||| | ||| ||| | || ||||| || | Sbjct 27495 CTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAA 27554 Query 176173 TGATTGGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTAC 176231 | | | | || || || ||||| |||||| | |||||| | | || || | || || Sbjct 27555 TTAATAGGTTT-TGTTTACGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATAT 27613 Query 176232 AACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCA 176291 || || || || || || || || || || ||||| || |||||| | || ||| Sbjct 27614 AATGCAATAGCTTTTTCGGGACCAATTGCAGT-TTTGTTTCAGTATTTCTTATTTATCCA 27672 Query 176292 CTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTC 176351 || || ||| || ||||| |||| || ||||| || ||||| ||||||||||| Sbjct 27673 CTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTT 27730 Query 176352 CTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTT 176411 | || ||| | || || ||||| |||||||| | || || |||||||||||||| ||| Sbjct 27731 ATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTT 27789 Query 176412 GCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACC 176471 ||||| ||||| ||||||||| || | | || || ||||| | ||||| ||||||||| Sbjct 27790 GCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACC 27849 Query 176472 CTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAA 176531 ||| ||||||||| ||| || || |||| || || | || || ||| Sbjct 27850 TTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAA 27909 Query 176532 GAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTT 176591 || || ||||| |||||||| || || || || ||||| ||||| || || ||||| ||| Sbjct 27910 GAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-TTT 27966 Query 176592 AGTAATAAGCGTTGGCTTCACTTCTTT--ATGTTGTTTGTCCCTGTCATGGGTCTTTGGG 176649 |||||| | ||||| || |||||| ||| | ||||| || || | || | ||| Sbjct 27967 TCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGG- 28025 Query 176650 TCTCAAG---TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGA 176706 |||| |||||| || || || ||||| | ||| | ||||| |||||||| || Sbjct 28026 --ACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTT 28083 Query 176707 GCCAAGAGATTA-GAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATC 176765 ||||| |||| | || ||||| ||||| || |||||||| || || || || || | Sbjct 28084 CTCAAGA-ATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTA 28142 Query 176766 CTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGA-TCAACCACATGAGTCATT 176824 || || || ||||| ||||||||||||||||| | || |||||||||||| ||| Sbjct 28143 CTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCAACCACATGA-AAATT 28201 Query 176825 TGTATTCCCAGAAGAAGTTCTACC 176848 |||||||||||| || ||| |||| Sbjct 28202 TGTATTCCCAGAGGAGGTTTTACC 28225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928532477960