Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq17 383 2e-101 >seq17 Length=139726 Score = 383 bits (424), Expect = 2e-101 Identities = 715/1024 (70%), Gaps = 31/1024 (3%) Strand=Plus/Plus Query 179223 TTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTG-TGGGTTGGTCTGG 179281 |||||| | | || || ||| | ||||| ||||||||||| ||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 179282 ACTCC--TACTTCTTCCCACTGCTTAT---CTTGCCATTGGCGGTTGGCTTACTGGGACA 179336 | ||||| |||| | | || || ||| | |||| |||| |||| || ||| Sbjct 27291 TTTGAATTACTT-TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACA 27349 Query 179337 GCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAAC 179396 |||| ||||| |||||| || || ||| | ||| ||| ||| | || || ||| Sbjct 27350 ACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAAT 27408 Query 179397 TTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 179456 ||| | || || || || || | ||||| || |||||| || ||| | | ||| || Sbjct 27409 TTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTT 27464 Query 179457 T--GGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGA 179514 | |||| || || |||| || |||| | ||||| ||| |||| || | |||| Sbjct 27465 TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGA 27524 Query 179515 ATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT-GGTTTCATGCTTAGG-CAATTTGA 179572 || ||| | || ||||| || | | | | ||||| || ||| | |||||||| Sbjct 27525 CATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGA 27582 Query 179573 ACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGC 179632 | | || | | | || || ||||| || ||||| || |||||||| || || ||||| Sbjct 27583 AATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGC 27642 Query 179633 TGTATTCGT-CAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGC 179691 || || | |||| ||| || || ||||| | ||||| | |||||||| | | Sbjct 27643 AGTTTTGTTTCAGTATTT--CTTATTTATCCACTTGGACAAGCTAGTTGGTTTTGCTCCT 27700 Query 179692 CGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACT 179751 || ||||| || || || ||||| || || | | || | || || ||||| |||| Sbjct 27701 AGT--TTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACT 27757 Query 179752 GGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCA 179811 |||| | || || |||||||||||||| |||||||| ||||| || |||||| | | Sbjct 27758 GGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGT 27817 Query 179812 GTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATA 179871 | ||||| ||||||| |||||||| ||||| || | ||||||||| ||| || |||| Sbjct 27818 GCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATA 27877 Query 179872 CCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 179931 | || | || ||| | ||||| |||||| |||||||| ||||| || || || | Sbjct 27878 CTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATC 27937 Query 179932 GCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATT--TTTT 179989 | || ||||| || || || ||| |||| |||||||| || | ||||| |||| ||| Sbjct 27938 G-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTG 27994 Query 179990 CATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGC 180049 ||| | |||||||| |||| || |||||||| |||||||| ||||| || ||||| Sbjct 27995 AATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGC 28054 Query 180050 TCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGA 180109 | || | ||||| || |||||||| ||| || | | || ||||| ||||| || Sbjct 28055 ATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGA 28114 Query 180110 GTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGC 180169 ||||| ||||| || || || || | || || |||||||| || | |||||| |||| Sbjct 28115 ATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGC 28174 Query 180170 ACCAGTTGA-TCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTA 180228 | || || |||||||||||| ||| ||||||||||| || ||| | ||| | || | Sbjct 28175 AACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAA 28233 Query 180229 ATGC 180232 |||| Sbjct 28234 ATGC 28237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606008713710960