Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq17 365 5e-96 >seq17 Length=139726 Score = 365 bits (404), Expect = 5e-96 Identities = 709/1023 (69%), Gaps = 33/1023 (3%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTG-TTGGCTGGTCTGG--------ACTT 159961 || || ||||| ||||| ||||| || || ||| |||| ||||| || |||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 159962 CTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCA 160021 | ||| |||| | | || | ||| |||| |||| |||| || |||||||| | Sbjct 27303 TTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGTACAACTTT-GTT 27357 Query 160022 ACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTAC 160080 || |||||||| ||||| | ||| ||| ||| | || || || || ||| | || Sbjct 27358 ACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAA--TTTTTAAC 27415 Query 160081 AGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCC 160140 || |||| | || || | |||||| || || | || || | ||||| || Sbjct 27416 TGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACC 27474 Query 160141 TGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGC 160200 || |||||||| ||||| || ||| ||| |||| || | |||| ||| || Sbjct 27475 AGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGC 27534 Query 160201 ACTCCATGGTGCCTTCGCCCT-AATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTC 160259 | |||||||| || | | ||| || || | | ||||| |||||| | ||| | Sbjct 27535 TTTACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGAT 27593 Query 160260 TCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCA 160319 | | || || | || || ||||| || || || || || || ||||| || ||||| Sbjct 27594 TAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGT-TTTGTTT 27652 Query 160320 GCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGG 160379 ||||| || || || ||| | || || | |||||||||| ||||| ||||| | Sbjct 27653 CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAG 27710 Query 160380 TGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACC 160439 | ||||| ||||||||||| | || || | ||||| || || |||||||| | || | Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 160440 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATG 160499 | |||||||||||||| |||||||| ||||| || |||||| | | | || || |||| Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 160500 GCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGT 160559 | | |||||||| || || | | ||||||||| ||| || ||||| || | || | Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTT 27889 Query 160560 TTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGC 160619 || | ||||| |||||| |||||||| ||||| || || || || || ||||| | Sbjct 27890 TTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCAC 27948 Query 160620 AGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATT--TTTTCATGTTGTTTGT 160677 | || || ||| |||| |||||||| || | ||||| |||| ||| ||| | ||||| Sbjct 27949 AAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGT 28006 Query 160678 GCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCG 160737 ||| |||| || | |||||| |||||| ||||| || ||||| | ||| | || Sbjct 28007 GCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACG 28066 Query 160738 TGCTTACGATTTCGTGAGTCAAGAGATTA-GAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 ||| || |||||||| |||||| |||| | || ||||| |||||||||||||| |||| Sbjct 28067 TGCATATGATTTCGTTTCTCAAGA-ATTACGTGCCGCAGAGGATCCAGAATTTGAAACCT 28125 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA-C 160855 | || || || || | || || |||||||| || | |||||| | ||| | || Sbjct 28126 TTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATT 28185 Query 160856 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 160915 ||||| ||||| || ||| | |||||||| || ||| | || | || || ||||||||| Sbjct 28186 CAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAA 28244 Query 160916 TAA 160918 ||| Sbjct 28245 TAA 28247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552472792007360