Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq17 389 5e-103 >seq17 Length=139726 Score = 389 bits (430), Expect = 5e-103 Identities = 716/1023 (70%), Gaps = 29/1023 (3%) Strand=Plus/Plus Query 180021 TTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTG-TGGGCTGGTCTGG 180079 |||||| | | || || ||||| ||||| || |||||||||||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 180080 ACT--ACTACTTCTTCCCACTGCTTAT---CTTGCCATTGGCGGTTGGCTTACTGGCACA 180134 | | ||||| |||| | | || || ||| | |||| |||| |||| || ||| Sbjct 27291 TTTGAATTACTT-TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACA 27349 Query 180135 GCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAAC 180194 |||| || || |||||| || || ||| | |||||||| ||| | ||||| ||| Sbjct 27350 ACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAAT 27408 Query 180195 TTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 180254 ||| | || || || || || | ||||| | |||||| || ||| | | ||| || Sbjct 27409 TTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTT 27464 Query 180255 T--GGGGTCCTGAGTCTCAGGG-GAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGG 180311 | |||| || || |||| || || ||| | | | ||||| ||| |||| || | ||| Sbjct 27465 TATGGGGACCAGAAGCTCAAGGTGATTTTACTA-GATGGTGTCAAATTGGAGGTTTATGG 27523 Query 180312 AATTTCGTGGCTCTCCACGGTGCCTTCGCCCT-AATTGGATTTATGCTACGCCAGTTTGA 180370 | || ||| | || ||||| || | | ||| || ||| | |||| || ||||| Sbjct 27524 ACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGA 27582 Query 180371 ACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGC 180430 | | ||| | | | || || | || || ||||| || || || || || || || || Sbjct 27583 AATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGC 27642 Query 180431 TGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCC 180490 || ||||| |||||||| || || ||||| || || | |||||||| ||||||| Sbjct 27643 AGT-TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCC 27699 Query 180491 CTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTG 180550 |||||| || ||||| ||||||||||| | | ||| | || || ||||| ||||| Sbjct 27700 TAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTG 27758 Query 180551 GACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATC 180610 ||| | || || |||||||||||||| |||||||| ||||| ||||||||||| | | Sbjct 27759 GACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTG 27818 Query 180611 AGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACAC 180670 || || ||||| | |||||| || || || | | ||||||||| ||| || || || Sbjct 27819 CGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATAC 27878 Query 180671 CTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCG 180730 || | || ||| |||| ||| || |||||||| || ||||| || || || || Sbjct 27879 TTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG 27938 Query 180731 CTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATT--TTTTC 180788 || ||||| || || || ||| |||| |||||||| || | ||||| |||| ||| Sbjct 27939 -TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGA 27995 Query 180789 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 180848 ||| | |||||||| |||| || |||||||| |||||||| ||||| || ||||| Sbjct 27996 ATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCA 28055 Query 180849 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAG 180908 | || | ||||| || |||||||| |||||| | | || ||||| ||||| || Sbjct 28056 TTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAA 28115 Query 180909 TTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCA 180968 || || || || || || || || | || | |||||||| || | |||||| ||||| Sbjct 28116 TTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCA 28175 Query 180969 CCTGCCGA-TCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAA 181027 | || ||||||||| ||||| || | ||||| || || ||| ||||| | || || Sbjct 28176 ACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 28234 Query 181028 CGC 181030 || Sbjct 28235 TGC 28237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610328707392960