Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq72 224 1e-53 seq82 212 9e-50 seq66 206 4e-48 seq89 178 2e-39 >seq72 Length=85273 Score = 224 bits (248), Expect = 1e-53 Identities = 369/525 (70%), Gaps = 9/525 (2%) Strand=Plus/Plus Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || ||||| | |||||||| || ||| | ||||| |||||||| | || ||| Sbjct 75633 AATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGC 75692 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || ||||| | |||||| | ||||||||||| | ||| || || || || || || ||| Sbjct 75693 ATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCT 75752 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TGTATCCAC 39799 ||||| || ||||| || || || | || | ||| | | || | | ||||| Sbjct 75753 TCTACCGCAGCAAAAGCTACCAGACGTTCAGCA-AAC--GAAGCAGAAGACTCAATCCAT 75809 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG-AG 39858 ||| | ||||| | |||||||||| | ||| || ||| ||| || || | |||| | Sbjct 75810 TTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAAGTAA 75869 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 | | ||||| | | |||| | | |||||| || || | ||| |||| ||||||| Sbjct 75870 ACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGA 75929 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 |||||| ||||| || || ||||||||||| || ||||||| |||||||| |||||| || Sbjct 75930 ATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAAC 75989 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 || || ||||||||| || | ||| || || || ||||| | ||||| || Sbjct 75990 ATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAA 76048 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 |||||||||||| ||||| | |||||| | ||||| || ||||| || | | Sbjct 76049 TGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAA 76108 Query 40099 ATCTTTTGATATATC-TACTTCTTCAGCTGTCCAAAACGACGCCT 40142 ||| ||| | || | ||||||||| |||||||| || |||| Sbjct 76109 ATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGCCT 76153 >seq82 Length=95658 Score = 212 bits (234), Expect = 9e-50 Identities = 376/537 (70%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 || || || || || ||||| | |||||||| || ||| | ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG--ATCCAGAAA 39731 | || ||||| ||||| | |||| | ||||||||||| | |||||| |||| || | Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAA-CAAAAGGAATCCCGAGA 94637 Query 39732 AGAAGATGCCTTCTA-CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA 39790 | || || ||||||| | || |||||||| || || | || | ||| | | || | Sbjct 94636 AAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCA-AAC--GAAGCAGAA 94580 Query 39791 ---TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | ||||| ||| | ||||| | |||||||||| | ||| || ||| ||| || Sbjct 94579 GACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATT 94520 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||| | | | ||||| | | |||| | | |||||| || || | ||| | Sbjct 94519 GCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAA 94460 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||| ||||||||||||| ||||| || || ||||||||||| || ||||||| ||||||| Sbjct 94459 TACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCA 94400 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATT-TTCATTCACTATTCCATCACT 40026 | |||||| || || || ||||||||| || | ||| | | || || ||||| Sbjct 94399 GGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGA 94341 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 | ||||| |||||||||||||| ||||| | |||||| | ||||| || || Sbjct 94340 GGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTT 94281 Query 40087 CCAGTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 ||| || | | ||| ||| | || | ||||||||| |||||||| || |||| Sbjct 94280 CCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCCT 94224 >seq66 Length=178311 Score = 206 bits (228), Expect = 4e-48 Identities = 349/494 (71%), Gaps = 15/494 (3%) Strand=Plus/Minus Query 39660 CGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAA 39719 |||| |||||||| | || ||||| ||||| | |||||| | |||||||||| | ||| Sbjct 8337 CGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAA 8278 Query 39720 AAG-ATCCAGAAAAGAAGATGCC-TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA 39777 ||| | || || || || || || ||| || || ||||| || || || | || | | Sbjct 8277 AAGGAACCCGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCA-A 8220 Query 39778 ACTTGTATCATTA---TGTATCCACTTCT--GTGCCCAATCAGCTTTCTTCTTTACACAA 39832 || | | || | | ||||| |||| | ||||| | |||||||||| | ||| Sbjct 8219 AC--GAAGCAGAAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACAC 8162 Query 39833 GGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTA 39892 || ||| ||| || || | ||| | | | ||||| | | |||| | | |||||| Sbjct 8161 GGAATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTG 8102 Query 39893 TCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAA 39952 || || | ||| |||| ||||||||||||| ||||| || || ||||||||||| || Sbjct 8101 TCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAG 8042 Query 39953 AAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTC 40012 ||||||| |||||||| |||||| || || |||||||||||| || | ||| || Sbjct 8041 AAACATCGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAA 7982 Query 40013 ACTATTCCAT-CACT--AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 || || |||| | || | ||||| |||||||||||||| ||||| | |||| Sbjct 7981 ACGATACCATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCA 7922 Query 40070 TCGGGTGTCAA-TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 40128 || | ||||| ||| |||||||| | | ||| ||| | || | ||||||||| || Sbjct 7921 TCTGCAGTCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGT 7862 Query 40129 CCAAAACGACGCCT 40142 |||||| || |||| Sbjct 7861 CCAAAATGAAGCCT 7848 >seq89 Length=114172 Score = 178 bits (196), Expect = 2e-39 Identities = 309/441 (70%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || || |||||||| | ||| ||||||| || || || || ||||| || || Sbjct 96965 GCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAG 97024 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||||||||| | || || || || | ||||||||||| | ||||||| ||||||||||| Sbjct 97025 TCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAA 97083 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGT-ATCATTATGT 39793 || ||||| || |||||||| ||||| || | ||| | |||| || | || | | Sbjct 97084 TATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACTC-GA 97142 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| ||| | |||||| || ||||| || || || || | |||| || ||| Sbjct 97143 ATCCATTTCAACGACCAATCCGCCTTCTT-TTCACGCAGGGAAGGTTTTCAATGGCAAAG 97201 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTT--AACATATGTATCTATTAACAGACTATACA 39911 || || | | ||||| || | || | || ||| || ||||| | || ||||| Sbjct 97202 AACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCATACA 97261 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || || | ||||| ||||||| ||||| || |||||||| | ||||| | | Sbjct 97262 TTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGGGA 97321 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT--CACTAGC 40029 |||||| || | | || | | ||||| ||||||||||| || |||| | ||| Sbjct 97322 CTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAAGC 97381 Query 40030 GGCAAAAAATGCCAATACATG 40050 ||||| || ||||| || || Sbjct 97382 AGCAAAGAAAGCCAAAACGTG 97402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907795395880