Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq89 241 1e-58 seq72 179 3e-40 seq82 178 1e-39 seq66 149 5e-31 seq33 95.1 1e-14 >seq89 Length=114172 Score = 241 bits (266), Expect = 1e-58 Identities = 400/565 (71%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| || |||||||| ||| | || || ||||||| |||||||| || ||| Sbjct 97520 ATCTGGGAATTGTACAAACGTGCAGAAGCTAGTTTCTGGACAGTCGAAGAAGTCGACTTG 97461 Query 43790 ACTAAAGACTTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTT 43847 || ||||||| ||||| ||| || | | || ||| | || || ||||| Sbjct 97460 TCTCAAGACTTGCGGGATTGGGAATTCGCTTCAGGCTTCA-GAACAGCACTTCATATCCC 97402 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCG--ACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 |||||||| || |||||||| | | || || || |||||||| |||| ||| Sbjct 97401 ACGTTTTGGCTTTCTTTGCTGCTTCGGGTATGGCATCGTGAATGAAAACTTGGCAGCTCG 97342 Query 43906 GTTTGCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 ||| ||| ||||| ||| | || ||||| || ||||||||||| |||||| | || | Sbjct 97341 -TTTCAGCACCGAAGTACAAGTCCCCGAAGCGCGTTGTTTTTATGGCTTTCAACTGGCGA 97283 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGC 44024 | |||||| | || ||||||||||| | |||||||| ||||| || ||| | | Sbjct 97282 TGGAAAATGTACACTCGGAAATGTATGCGTTGCTGATAGACACGTATATTCGAGAGGTGT 97223 Query 44025 --ACGAGAAGCATCGATTGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATAAAG 44081 | || |||| |||| |||| ||| || |||| | | |||||| | || | || | Sbjct 97222 CGAAGAAAAGCGTCGACTGTTCTTTGCCATTGAAAACCTTCCCTGCG--TGAAAAGAAGG 97165 Query 44082 CAGACTGGGCCCTTAAATGGATAAATTCAAATGAT-TC----TTTTGGAGAACGACTTGT 44136 | || ||| | | |||||||| || | || | || ||||| || || || || Sbjct 97164 CGGATTGGTCGTTGAAATGGAT----TCGAGTGTTCTCATAGTTTTGCCGAGCGTCTGGT 97109 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||||| || ||||| || |||||||| || || |||| ||||||||||||| Sbjct 97108 TGCTTTTGCAGCGGTCGAAGGGATATTCTTTTCTGGTTCTTTTGTT-CCATATTTTGGTT 97050 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 |||||||| || ||||||||||| |||| ||||| |||||||| ||| || ||||| Sbjct 97049 GAAGAAACGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCACGAGATGA 96990 Query 44257 AGGCTTACATTGCGATTTTGCTTGC 44281 |||||| ||||| || ||||||||| Sbjct 96989 AGGCTTGCATTGTGAATTTGCTTGC 96965 >seq72 Length=85273 Score = 179 bits (198), Expect = 3e-40 Identities = 265/373 (71%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || |||||| | || |||||||||||||| ||||| ||||| || || || |||||||| Sbjct 75992 GATGTTCAAATTCCTGAAGCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATC 75933 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| |||| ||| ||| || || || || || || | ||||| || || ||| | Sbjct 75932 CATTCAGAAACGTATTCTCTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCT 75873 Query 44036 CGATTG-TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || || ||| | || || ||| | | || ||| | | ||||| | ||||| || Sbjct 75872 CGTTTACTTTGAAGCAATGGAACGAATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCT 75813 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||||| | || || ||| |||| ||||| || || || ||||| | || || Sbjct 75812 GAAATGGATTGAGTCTTCTGCTTCGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGA 75753 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || || || ||| ||||||||||||| || || ||||| | || Sbjct 75752 AGGAATATTTTTCTCGGGTTCCTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCAT 75693 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG-ATT 44273 ||| || ||||| ||||| || ||| | || | ||||| || || ||||||| ||| Sbjct 75692 GCCAGGCTTGACATTTTCCAACGAGCTGATTTCAAGGGATGAGGGTTTGCATTGCGAATT 75633 Query 44274 TTGCTTGCTTGTT 44286 |||| || ||||| Sbjct 75632 TTGCATGTTTGTT 75620 >seq82 Length=95658 Score = 178 bits (196), Expect = 1e-39 Identities = 265/373 (71%), Gaps = 5/373 (1%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || |||||| | || |||||||||||||| ||||| ||||| || || || |||||||| Sbjct 94386 GATGTTCAAATTCCTGAAGCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATC 94445 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| |||| ||| ||| || || || || || || | ||||| || || ||| | Sbjct 94446 CATTCAGAAACGTATTCTCTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCT 94505 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 || || ||| | || || ||| | | || ||| | | ||||| | ||||| || Sbjct 94506 CGTTTATTTGAAGCAATGGAACGAATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTG 94565 Query 44096 AAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG-TGGA 44154 |||||||| | || || ||| |||| ||||| || || || ||||| | | | || Sbjct 94566 AAATGGATTGAGTCTTCTGCTTCGTTTGCTGAACGTCTGGTAGCATTTGCTGCGGTTAGA 94625 Query 44155 AGGCATTTTCTTTTCAGGA-TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 ||| || || || || ||| || ||| ||||||||||||| |||| ||||| | | Sbjct 94626 AGGAATATTTTTCTCGGGATTCCTTTTGTTCCATATTTTGGTT---GAAAAGAGGTCTCA 94682 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || ||||| ||||| || ||| | || | ||||| || || |||||||| | Sbjct 94683 TGCCAGGCTTGACATTTTCCAACGAGCTGATTTCAAGGGATGAGGGTTTGCATTGCGAAT 94742 Query 44274 TTGCTTGCTTGTT 44286 |||| || ||||| Sbjct 94743 TTGCATGTTTGTT 94755 >seq66 Length=178311 Score = 149 bits (164), Expect = 5e-31 Identities = 269/387 (70%), Gaps = 15/387 (4%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || |||||| | || |||||||||||||| ||||| ||||| || || || |||||||| Sbjct 8013 GATGTTCAAATTCCTGAAGCACGATGTTTCTATGGATTTCAGATAGCAATGGAAAATATC 8072 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| |||| ||| ||| || || || || || || | ||||| || || ||| | Sbjct 8073 CATTCAGAAACGTATTCTCTACTTATCGACACATATATAAGAGATGCTCAGGAAAAGGCT 8132 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT- 44094 || || ||| | || || ||| | | || ||| | | ||||| | ||||| || Sbjct 8133 CGTTTATTTGAAGCAATGGAACGAATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTG 8192 Query 44095 -TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 |||||||| | || || ||| |||| ||||| || || || ||||| | || | Sbjct 8193 AGAAATGGATTGAGTCTTCTGCTTCGTTTGCTGAACGTCTGGTAGC-TTTGCTGCGGTTG 8251 Query 44154 AA-GGCATTTTCTTTTCAGGAT-CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 || || || || || || || | | |||| |||||||||||| || || ||||| | Sbjct 8252 AAGGGAATATTTTTCTCGGGTTCCTTTTGTTCTCATATTTTGGTTGAAAAAGAGAGGTCT 8311 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTC------GTGATGAAGGCTTACA 44265 ||||| || ||||| ||||| || | | || | | | ||||| || || || Sbjct 8312 CATGCCAGGCTTGACATTTTCCAA--CGCTCATGGGACTGTTAAGGGATGAGGGTTTGCA 8369 Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGG 44292 |||||||||||| || |||| ||||| Sbjct 8370 TTGCGATTTTGCATGTTTGT--CTTGG 8394 >seq33 Length=99407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || |||||| || || |||||||| || || ||||| | || |||| || ||||| Sbjct 21066 ATAGGAGGACTGGACAAGGAGTTTTCGGATAT-TTTCGACGTGCTTTTGCTTCTCGTGTG 21008 Query 19303 TTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACAT-GTTCGTGGACTTTTGCTTT 19360 ||| || | || ||||| | |||| || | || || ||| | ||||||| Sbjct 21007 TTTCCTCCTTCGGTTATTAAGAAGCTTGGCATCCGACCAGCGTGAAAGGAATGTTGCTTT 20948 Query 19361 ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTAC-- 19418 |||| ||||| || ||||| || || ||||| ||| || || | ||| | | | Sbjct 20947 ATGGTCCACCTGGCACAGGAAAGACGTTGATTGCCAGACAAATTGGCAAAATGTTGAATG 20888 Query 19419 -AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAAT 19477 ||| |||| |||| |||| |||||||| ||||| || ||||| ||||| || |||| Sbjct 20887 GAAAGGAACC---CAAAGTTGTCAATGGTCCCGAAATATTGAATAAGTATGTGGGACAAT 20831 Query 19478 CGGAAGAAAA 19487 |||||||||| Sbjct 20830 CGGAAGAAAA 20821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455433252585