Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq74 109 5e-19 seq103 98.7 8e-16 >seq74 Length=163707 Score = 109 bits (120), Expect = 5e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| |||||||||||||||||||| || |||||||| | || || | ||||| ||| Sbjct 151741 TTCTACTCGCTTCATAAACAAATCGGGAACCCATAAACCATAAAATAAATCTCGTGCTCG 151800 Query 131704 TTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762 |||||||| | |||| ||| ||| |||||| |||||| || ||| ||| ||||||| Sbjct 151801 ATTCTCTTC-CTTTCCATGATTCTTTCTCAAATCTAAAAACTCAAAATGGTCGGCATGCC 151859 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT 131806 | || |||||||| | || | || ||||| | ||| || ||| Sbjct 151860 AAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCTTTCCTCCT 151903 >seq103 Length=203287 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | |||| ||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 14160 CCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGAC 14219 Query 27081 ATGTTGCGCTCGTCTTCGAGCTG--TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | |||||||||| || ||| || || | || || | |||||||| || | Sbjct 14220 AGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGG 14279 Query 27139 GCACACCCTCTTTATC-GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 | | ||| |||||||| | ||||| ||||| |||||| ||| || | | ||| Sbjct 14280 GTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCG 14339 Query 27198 ACTTCTAGAGTTA-------TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| |||| | | || || |||| ||||||||||| |||||||| Sbjct 14340 ACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933794070104