Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq72 127 3e-24 seq66 111 2e-19 seq82 109 7e-19 seq17 104 3e-17 seq5 95.1 2e-14 seq97 86.0 8e-12 >seq72 Length=85273 Score = 127 bits (140), Expect = 3e-24 Identities = 335/503 (67%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||||||||| | ||||| || || || || || | |||||||||||||| | ||| Sbjct 75647 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTT 75706 Query 122736 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 ||||||||| | || | || || || || ||||| || || || || || ||||| Sbjct 75707 TTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGCAGCAAA 75766 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTT 122855 || | || ||||| || || || ||| | |||| |||||||| |||||||| Sbjct 75767 AGCTACCAGACGTTCAGCAAACGAAGCAGA---AGACTCAATCCATTTCAGAGCCCATTT 75823 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA-TAACTGCTTCTTTTCAG 122914 || |||||||||||||| || | || || |||||||| ||| | |||||| Sbjct 75824 GGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAAGTAAACGAGCCTTTTCCT 75883 Query 122915 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 122974 |||| | || ||| |||| || | | ||||| ||||| ||| | |||| Sbjct 75884 GAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCA 75943 Query 122975 TATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAA 123033 | || || ||| || | ||||| | || ||||| || ||||| || ||| ||| Sbjct 75944 T-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC--CCGACAAA 76000 Query 123034 TTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTA 123092 | || | | |||||| ||||| || ||||| || |||||||||||||| | | Sbjct 76001 TCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCAATACATG 76060 Query 123093 CTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAA 123152 || || | ||||| | || ||| | ||||| || || | ||| ||||| Sbjct 76061 AGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAAATCACCTGACAA 76120 Query 123153 ATC-AACTTCTTCCGCAGTCCAA 123174 || | |||||| ||||||||| Sbjct 76121 GTCGGATTTCTTCAGCAGTCCAA 76143 >seq66 Length=178311 Score = 111 bits (122), Expect = 2e-19 Identities = 315/470 (67%), Gaps = 18/470 (4%) Strand=Plus/Minus Query 122716 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAAT-AGCGCAGAATGACCCGGAGAAGAA 122774 |||||||||||||| | ||| ||||||||| | || || || || || || ||||| || Sbjct 8320 CCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCGAGAAAAA 8261 Query 122775 GATACCCTCCACACAC-GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCAT 122833 || |||| || | | ||||| || | || ||||| || || || ||| | | Sbjct 8260 TATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA---GACT 8205 Query 122834 CAAACCATTTC--ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| ||||||| | |||||||| || |||||||||||||| || | || || || Sbjct 8204 CAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGC 8145 Query 122892 TTCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATA 122951 ||||||||| | |||||| |||| | || ||| |||| || | | ||||| Sbjct 8144 TTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATA 8085 Query 122952 TGTTTCGCCATGAACCATTTCATTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGC 123010 ||||| ||| | |||| | || || ||| || | ||||| | || ||||| Sbjct 8084 CGTTTCTGAATGGATATTTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAG 8026 Query 123011 TTATCTGAACCTCATCCG-CAAAATTGTTAT-TGATATTCTCAAAAACAATTCCA---TC 123065 || ||||| || ||| |||||| || | | |||||| ||||| || ||| || Sbjct 8025 GAATTTGAACATC--CCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATACTC 7968 Query 123066 GGACCCAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTC-AGGG 123124 || |||||||||||||| | | || || | ||||| | || || | Sbjct 7967 TGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTT 7908 Query 123125 TCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 123174 | |||||||| || | ||| ||||| || | |||||| ||||||||| Sbjct 7907 TTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAA 7858 >seq82 Length=95658 Score = 109 bits (120), Expect = 7e-19 Identities = 334/505 (66%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||||||||| | ||||| || || || || || | |||||||||||||| | | Sbjct 94729 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTC---T 94673 Query 122736 CTTCAACCAATAAATAGCGCAGAATGAC-CCGGAGAAGAAGATACCCTCCACACAC-GCA 122793 ||||||||| | || | || || || || ||||| || || || || | | | ||| Sbjct 94672 TTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAAAAATATTCCTTCTAACCGCAGCA 94613 Query 122794 AACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCAT 122853 || || | || ||||| || || || ||| | |||| |||||||| |||||| Sbjct 94612 AATGCTACCAGACGTTCAGCAAACGAAGCAGAA---GACTCAATCCATTTCAGAGCCCAT 94556 Query 122854 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCA 122913 || || |||||||||||||| || | || || ||||||||||| | |||||| Sbjct 94555 TTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCC 94496 Query 122914 GATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCA 122973 |||| | || ||| |||| || | | ||||| ||||| ||| | |||| Sbjct 94495 TGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCC 94436 Query 122974 TTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAA 123032 | || || ||| || | ||||| | || ||||| || ||||| || ||| || Sbjct 94435 AT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC--CCGACAA 94379 Query 123033 ATTGTTAT-TGATATTCT-CAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATG 123090 || || | | ||||| | ||||| || ||||| || |||||||||||||| | Sbjct 94378 ATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCAATACA 94319 Query 123091 TACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATC-TTTGGA 123149 | || || | ||||| | || ||| | ||||| || || | ||| || Sbjct 94318 TGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAAATCAGCCTGA 94259 Query 123150 CAAATCAACTTCTTCCGCAGTCCAA 123174 ||| || | |||||| ||||||||| Sbjct 94258 CAAGTCGATTTCTTCAGCAGTCCAA 94234 >seq17 Length=139726 Score = 104 bits (114), Expect = 3e-17 Identities = 216/317 (68%), Gaps = 5/317 (2%) Strand=Plus/Plus Query 11500 ATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAG 11559 |||||| || || ||||| | || || || | ||||| |||||||| || || | Sbjct 51969 ATTAGTTGCTGCTATAACAATTATACCTGTATTTCCTTCAAATCCATCCATTTCTGTTAA 52028 Query 11560 TAATTGA-TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTT 11618 || |||| |||| ||||||||||| |||||||| || | ||| | || | || Sbjct 52029 TAGTTGAATTAAGAGTTTGTTCTCTTTCATCATTGCCTCCACCAATACCTGTACCTCTTT 52088 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 | | || || |||||||| ||||| || || |||||||| ||| |||||| || Sbjct 52089 GTCTACCAACAGCATCAATTTCATCTATAAATACAATACAAGGTGCATTTTCTTTAGCTT 52148 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 ||| ||| || || | || || || || || || |||||||| || ||||| | || Sbjct 52149 TTTGAAA-AGGTCTCTTACTCTAGACGCTCCTACTCCTACAAACATTTCTACAAATTCTG 52207 Query 11739 CGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 ||| | ||| | ||||| ||| || ||| || || || ||| ||| | || Sbjct 52208 ATCCAGAAATACT--AAAAATGGTACACCTGCTTCGCCAGCAATAGCTTTGGCTAAAAGA 52265 Query 11798 GTCTTTCCCGTACCTGG 11814 || ||||| |||||||| Sbjct 52266 GTTTTTCCTGTACCTGG 52282 >seq5 Length=251617 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/200 (72%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| |||||||| || || || |||||||| | ||||||||||| ||||||||| || Sbjct 38331 TCAAAACCATCCATTTCTGTTAGCAATTGATTGAGCGTTTGTTCTCTTTCATCATTTCCT 38272 Query 11597 --GGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 ||| | ||| |||| | || | || || ||||| || ||||| || |||| || Sbjct 38271 CCGGC--AATACCTGCACCTCTCTGTCTACCTACTGCATCTATTTCATCTATAAAGATAA 38214 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC-A 11713 |||| ||| ||| | ||| | ||| | ||| ||||| | | ||||| || Sbjct 38213 TACAAGGTGCATTCTTCTTGGCTTGTGTAAATAAATCACGAACACGACTAGCACCAACTT 38154 Query 11714 CCAACAAACATCTCCACAAA 11733 ||||||||||| || ||||| Sbjct 38153 CCAACAAACATTTCTACAAA 38134 >seq97 Length=204726 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATT--AATTGTTTGTTCTCTCTCA-TCATTT 11593 ||||| |||||||| || ||||| || ||||| || ||||||||||| ||| | |||| Sbjct 196089 TCAAAACCATCCATTTCCGTGAGCAACTGATTGGAAGCGTTTGTTCTCTTTCAATGATTT 196148 Query 11594 GCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 || | |||||||| | || | || || ||||| || ||||| || |||| Sbjct 196149 CCTCCAGCAATACCAGCACCTCTCTGTCTACCAACTGCATCTATTTCATCTATAAAGATG 196208 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| ||| ||| | || | | |||| | ||| ||||| | ||||||| || Sbjct 196209 ATACAAGGTGCATTCTTTTGG-CTTGTGCAAATAAATCACGAACACGACTGGCACCAACG 196267 Query 11714 CCAACAAACATCTC--CACAAA 11733 ||||||||||| || |||||| Sbjct 196268 CCAACAAACATTTCGTCACAAA 196289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031081503200