Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq72 98.7 1e-15 seq89 82.4 9e-11 >seq72 Length=85273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/419 (67%), Gaps = 21/419 (5%) Strand=Plus/Plus Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 |||||| || | || || || || || || || || |||||||||||||| | ||| Sbjct 75647 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTT 75706 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 |||||||| || || | |||||| || || ||||| || || || || || || || Sbjct 75707 TTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGCAGCAAA 75766 Query 130153 CGCAAAGAGACGCTCAGCAAA-GGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACT 130211 || | ||||| |||||||| | ||| | | | |||| ||| |||| ||||| | Sbjct 75767 AGCTACCAGACGTTCAGCAAACGAAGCAGAA----GACTCAATCCATTTCAGAGCCCATT 75822 Query 130212 GCGCCTTTTTCTCGATACACGGGA--CGGTCTGGATCGCTTCAAAG----AGTTCCTTCT 130265 || || ||||| |||||||| | || || || ||||||||| | ||| | Sbjct 75823 TGGCTTTCTTCTCAATACACGGAATTCGTTC--CATTGCTTCAAAGTAAACGAGCCT--T 75878 Query 130266 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCA 130325 || |||| | |||| | || || | || || ||| ||||| ||||| ||||| Sbjct 75879 TTCCTGA-GCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATAT 75937 Query 130326 TTTCATTATGGCA-CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384 |||| | || | |||| | | |||||| | || ||||| || || || || | Sbjct 75938 TTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC--CC 75994 Query 130385 GCAAAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 | |||| || | | |||||| ||||| || ||||| || |||||| || |||| Sbjct 75995 GACAAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCA 76053 >seq89 Length=114172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || || || || || || | ||||| || ||| ||| || ||||| | ||||| ||| Sbjct 96987 CCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTC 97046 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||| || || | |||||| || ||||| ||||| ||||| || || || || Sbjct 97047 TTCAACCAAAATATGGAACAAAA-GAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAA 97105 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 |||| |||||||| ||||| Sbjct 97106 GCAACCAGACGCTCGGCAAA 97125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434295538520