Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq72 125 8e-24 seq82 105 8e-18 seq66 91.5 2e-13 >seq72 Length=85273 Score = 125 bits (138), Expect = 8e-24 Identities = 335/503 (67%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 94440 TTGGACTGCTGAAGAGGTA-GATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATG 94498 ||||||||||||||| | || | ||| |||||||| |||||||| | | | || Sbjct 76143 TTGGACTGCTGAAGAAATCCGACTTGTCAGGTGATTTGGAAGATTGGAAAAAGTTGACTG 76084 Query 94499 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTG 94558 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 76083 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 76024 Query 94559 TTTTTGAGAATAT--CAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATC 94616 |||| |||||| | || || | |||| | || || ||| ||||||| ||| Sbjct 76023 TTTTGGAGAATCTTGCAGAAAGA--TTTGTCGG-GATGTTCAAATTCCTGAAGCACGATG 75967 Query 94617 CTTCTATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCA 94675 ||||||| | |||| | |||| ||| | ||| || || || | ||| | Sbjct 75966 TTTCTATGGATTTCAGA-TAGCAATGGAAAATATCCATTCAGAAACGTATTCTCTACTTA 75908 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT-CTTTGAAGCCATCCAAACA 94734 | |||| ||||| | |||| | || ||| | | ||||||||| || || | Sbjct 75907 TCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTACTTTGAAGCAATGGAACGA 75848 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794 ||||||||||| | |||||||| | |||||| |||| ||| |||| | || | Sbjct 75847 ATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT---TCTGCT 75791 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || |||||||| || || | || ||||| || || || || || ||||| |||||| Sbjct 75790 TCGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCC 75731 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || || | || | |||| | || ||| |||||||||||||||| | || |||||| Sbjct 75730 TTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAAC 75671 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| || || | || ||||| Sbjct 75670 GAGCTGATTTCAAGGGATGAGGG 75648 >seq82 Length=95658 Score = 105 bits (116), Expect = 8e-18 Identities = 334/505 (66%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAG-GATTTGGACGATTGGAAGACTCTAAATG 94498 ||||||||||||||| | || | ||| |||||||| |||||||| | | | || Sbjct 94234 TTGGACTGCTGAAGAAATCGACTTGTCAGGCTGATTTGGAAGATTGGAAAAAGTTGACTG 94293 Query 94499 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTG 94558 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 94294 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 94353 Query 94559 TTTTTG-AGAATAT--CAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 94615 |||| | ||||| | || || | |||| | || || ||| ||||||| ||| Sbjct 94354 TTTTGGGAGAATCTTGCAGAAAGA--TTTGTCGG-GATGTTCAAATTCCTGAAGCACGAT 94410 Query 94616 CCTTCTATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTC 94674 ||||||| | |||| | |||| ||| | ||| || || || | ||| Sbjct 94411 GTTTCTATGGATTTCAGA-TAGCAATGGAAAATATCCATTCAGAAACGTATTCTCTACTT 94469 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || |||| ||||| | |||| | || ||| | | |||||||| || || | Sbjct 94470 ATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAATGGAACGA 94529 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794 ||||||||||| | |||||||| | |||||| |||| ||| |||| | || | Sbjct 94530 ATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTC---TTCTGCT 94586 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGC-GTGTGTTGAGGGTATCTTCTTCTCTGG-TT 94852 || |||||||| || || | |||||||| | | | || || || || ||||| || || Sbjct 94587 TCGTTTGCTGAACGTCTGGTAGCATTTGCTGCGGTTAGAAGGAATATTTTTCTCGGGATT 94646 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| || | || | |||| | ||| |||||||||||||||| | || |||| Sbjct 94647 CCTTTTGTTCCATATTTTGGTT---GAAAAGAGGTCTCATGCCAGGCTTGACATTTTCCA 94703 Query 94913 ACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||| || || | || ||||| Sbjct 94704 ACGAGCTGATTTCAAGGGATGAGGG 94728 >seq66 Length=178311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTAT--GAAGT 94774 |||||||| || || | ||||||||||| | |||||||| | |||||| | ||| | Sbjct 8139 TTTGAAGCAATGGAACGAATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAGAAAT 8198 Query 94775 GGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG-AG 94833 || |||| | || ||| |||||||| || || | || ||||| |||| || Sbjct 8199 GGATTGAGTC---TTCTGCTTCGTTTGCTGAACGTCTGGTAGC-TTTGCTGCGGTTGAAG 8254 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCT-ATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 || || || ||||| |||||||| || || || | |||| | || ||| |||||||||| Sbjct 8255 GGAATATTTTTCTCGGGTTCCTTTTGTTCTCATATTTTGGTTGAAAAAGAGAGGTCTCAT 8314 Query 94893 GCCAGG 94898 |||||| Sbjct 8315 GCCAGG 8320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259946981080