Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq72 123 3e-23 seq82 104 3e-17 >seq72 Length=85273 Score = 123 bits (136), Expect = 3e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 ||||| ||||||| || | ||||| ||||| | || || ||||| ||||||| | Sbjct 75829 AAAGCCAAATGGGCTCTGAAATGGATTGAGTCTTCT-GCTTCGTTTGCTGAACGTCTGGT 75771 Query 59990 AGCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 ||||||||| |||| | |||||||| || ||||| || || || ||| | || || ||| Sbjct 75770 AGCTTTTGC-TGCGGTAGAAGGAATATTTTTCTCGGGTTCCTTTTGTTCCATATTTTGGT 75712 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 | |||||| | || |||||||| ||| ||| || ||||||||||||||||| |||| | Sbjct 75711 TGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAACGAGCTGATTTCAAGGGATG 75652 Query 60109 AGGG 60112 |||| Sbjct 75651 AGGG 75648 >seq82 Length=95658 Score = 104 bits (114), Expect = 3e-17 Identities = 150/205 (73%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 ||||| ||||||| || | ||||| ||||| | || || ||||| ||||||| | Sbjct 94548 AAAGCCAAATGGGCTCTGAAATGGATTGAGTCTTCT-GCTTCGTTTGCTGAACGTCTGGT 94606 Query 59990 AGCTTTTGCATGCG--TGGAAGGAATCTTCTTCTCTGGCT-CGTTCTGTGCTATTTTCTG 60046 ||| ||||| |||| | |||||||| || ||||| || | | || ||| | || || || Sbjct 94607 AGCATTTGC-TGCGGTTAGAAGGAATATTTTTCTCGGGATTCCTTTTGTTCCATATTTTG 94665 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 | | |||| | || |||||||| ||| ||| || ||||||||||||||||| |||| Sbjct 94666 GTTGAAAA---GAGGTCTCATGCCAGGCTTGACATTTTCCAACGAGCTGATTTCAAGGGA 94722 Query 60107 CGAGGGCCTCCATCAGGAGTTTGCA 60131 ||||| | ||| || |||||| Sbjct 94723 TGAGGGTTTGCATTGCGAATTTGCA 94747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523997782480