Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq89 98.7 1e-15 seq82 96.9 4e-15 seq72 95.1 1e-14 >seq89 Length=114172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || |||| |||||||||||| |||||| ||||| ||||| | || ||| Sbjct 96969 GCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGTCCA 97028 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || || |||||||||||||| |||| ||| || |||||| ||||| || Sbjct 97029 GGCATCAACCCCCGTTTCTTCAACCAAAATATGGAACA-AAAGAACCAGAAAAGAATATC 97087 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCG 74899 |||||||| ||||| || || || || Sbjct 97088 CCTTCGACCGCTGCAAAAGCAACCAGACG 97116 >seq82 Length=95658 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/157 (75%), Gaps = 7/157 (4%) Strand=Plus/Minus Query 74459 TGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTC 74518 |||||| ||||| || ||||||||||||| ||||||||| |||||||| || ||| ||| Sbjct 95093 TGAATACTCACCTACTCGCTTTTCAAAAA-GTTGGTCTTTCCTTCCAAAGATATGAGCTC 95035 Query 74519 CATCCAGTCGAAA-GGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCA 74574 |||||| || ||| ||||| | | | | ||||| ||||| || || ||| Sbjct 95034 CATCCAATCAAAACGGGTTTCTAGAATGGGAAATA--TTTCTCATATCCCAAGGCAACCA 94977 Query 74575 TGAGGCGATCCGCCACAAATTGAATGTACTGCGTCAT 74611 ||| ||||||| ||||||| ||||||||| |||| Sbjct 94976 AGAGACGATCCGAAACAAATTCAATGTACTGACTCAT 94940 >seq72 Length=85273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/156 (75%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 74459 TGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTC 74518 |||||| ||||| || |||||||||||| |||||||||| |||||||| || ||| ||| Sbjct 75285 TGAATACTCACCTACTCGCTTTTCAAAA-AGTTGGTCTTTCCTTCCAAAGATATGAGCTC 75343 Query 74519 CATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCAT 74575 |||||| || || ||||| | | | | ||||| ||||| || || ||| Sbjct 75344 CATCCAATCAAACGGGTT-TCTAGAATGGAAATA--TTTCTCATATCCCAAGGCAACCAA 75400 Query 74576 GAGGCGATCCGCCACAAATTGAATGTACTGCGTCAT 74611 ||| ||||||| ||||||| ||||||||| |||| Sbjct 75401 GAGACGATCCGAAACAAATTCAATGTACTGACTCAT 75436 Score = 93.3 bits (102), Expect = 5e-14 Identities = 322/491 (66%), Gaps = 16/491 (3%) Strand=Plus/Plus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| | || ||||| || |||| || || ||||| | | ||| ||||| || || Sbjct 75641 ATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACC 75700 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 | ||| ||||||||||| |||| ||| |||||||| ||| || || ||||| || Sbjct 75701 TCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGC 75760 Query 74882 CGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGAGC 74938 ||||| || || || |||| || |||| ||| |||| | ||||| || |||| Sbjct 75761 AGCAAAAGCTACCAGACGTTCAGCAAACGAAGCA---GAAGACTCAATCCATTTCAGAGC 75817 Query 74939 CCATTCAGCTTTTCGTTTGACCGCAGGGACAGT--ATCGATCGCTTGGAAG-AGGCTTGC 74995 ||||| || |||| | | | || ||| | | || || |||| ||| | | || Sbjct 75818 CCATTTGGC-TTTCTTCTCAATACACGGA-ATTCGTTCCATTGCTTCAAAGTAAACGAGC 75875 Query 74996 CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||| || | | ||| | | |||| || | || || ||||| || ||||| || Sbjct 75876 CTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGAT 75935 Query 75056 CGACT-CGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 | | ||| | | ||| | | |||||| | || || || | ||| || |||||| Sbjct 75936 ATTTTCCATTG--CTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATCC 75993 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 ||| || || | | |||||||| ||||| || || |||| || || || ||| Sbjct 75994 CGACAAATCTTTCTG-CAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCC 76052 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCC 75233 | ||| |||||||||||| ||||| |||| | || | |||||| | || || Sbjct 76053 AATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAAATCA 76112 Query 75234 CCCGCCAAATC 75244 || | ||| || Sbjct 76113 CCTGACAAGTC 76123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215199696600