Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq36 158 1e-33 seq77 134 2e-26 seq58 123 3e-23 seq72 100 3e-16 seq89 84.2 2e-11 seq27 84.2 2e-11 >seq36 Length=139094 Score = 158 bits (174), Expect = 1e-33 Identities = 173/224 (77%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTA--TT--ACTCTTGAGGTTGAGT 27460 |||||| || ||||| ||||| |||||||||||||| || |||||||| || ||| Sbjct 92429 AATGCAGATATTTGTAAAGACACTTACCGGCAAGACGTGCTTCAACTCTTGAAGTGGAGC 92370 Query 27461 CAGGTGATAGCATTGC-AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 | |||| |||| |||| | ||| | || || || |||||||| |||||||||||| Sbjct 92369 CTTCAGATACTATTGAGAAATGTCAAGTCCAAGATACAAGACAAGGAAGGAATTCCTCCA 92310 Query 27520 GACCAGCAGCG-TCTAATTTTTGCTGGTAAGCAAC-TCGAGGATGATCGTACCCTAGCAG 27577 |||||||| || | | || |||||||| ||||||| | || |||| |||||| || ||| Sbjct 92309 GACCAGCAACGTTTTGATATTTGCTGGAAAGCAACTTAGAAGATGGTCGTACTCTTTCAG 92250 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||||||| | |||||||| || || ||||| | || |||||| Sbjct 92249 ACTATAATATTCAAAAGGAGTCTACCCTTCACTTGGTATTGCGT 92206 Score = 111 bits (122), Expect = 2e-19 Identities = 171/240 (71%), Gaps = 12/240 (5%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATT-ACTCTTGAGGTTGAGTCAG 27463 |||||| || ||||| ||||| ||||| |||||||| ||| |||||||| || ||| | Sbjct 92019 AATGCAGATATTTGTGAAGACACTTACAGGCAAGACCATTCACTCTTGAAGTGGAGCCTT 91960 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAA-ATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| || | ||| | || || || || ||||| ||||| ||||||||| Sbjct 91959 CAGACACTATTGAGAACGTCAAGTCCCAAGATACAAGATAAGGAAGGAATCCCTCCAGAC 91900 Query 27523 CAGCAGCG-TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC----GTACCC-----T 27572 ||||| || | | || |||||||| |||||||| | | ||| || | | Sbjct 91899 CAGCAACGTTTTGATATTTGCTGGAAAGCAACTGGTCGGAAATCAGCTTTAGTCGTGATT 91840 Query 27573 AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||| | |||||||| || || ||||| | || |||||||| | ||||| Sbjct 91839 TCCAGACTATAATATTCAAAAGGAGTCTACCCTTCACTTGGTATTGCGTCTGAGGGGTGG 91780 >seq77 Length=161124 Score = 134 bits (148), Expect = 2e-26 Identities = 176/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || |||||||| || || || ||||| ||||| || ||||| ||||||||||| || ||| Sbjct 114757 ACAATAATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAG 114698 Query 27460 TCAGGTGATAGCATTGCAAATTTG--AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 | |||| |||| || || ||| | || || || |||||||| || ||||| | Sbjct 114697 CCCTCAGATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCC 114638 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGA--GGATGATCGTACCCTAGC 27575 |||||||||| ||| | |||||||| ||||| || | || | ||| ||| || || | Sbjct 114637 CAGACCAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCACTCTCG- 114579 Query 27576 AGACTATAA-TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||| || | |||||||| || ||||| || | ||||| ||||| | |||||| Sbjct 114578 AGACTACAACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACGTCTAAGGGGTGGA 114520 Score = 105 bits (116), Expect = 8e-18 Identities = 167/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTA--CTCTTGAGGTTGAGTCA 27462 |||||| || || || ||||| ||||| || ||||| | | ||||||| || ||| | Sbjct 114060 AATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCC 114001 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | |||| | | | ||| | || || || |||||||| || ||||| |||||| Sbjct 114000 TCAGACACTATTGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGAC 113941 Query 27523 CAGCAGCGTCTAATTTT--TGC-TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||| ||| | ||||| || ||| || || | || |||| |||||| || ||||| Sbjct 113940 CAGCAACGTTTGATTTTGCAGCTTGGGAAACAGTTGGAAGATGGTCGTACTCTCTCAGAC 113881 Query 27580 TATAA-TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | |||||| || |||||||| | ||||| ||||| | |||||| Sbjct 113880 TACAACAGCTTCAAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGA 113826 Score = 105 bits (116), Expect = 8e-18 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATT-ACTCTTGAGGTTGAGTCAG 27463 |||||| || || || ||||| ||||| || ||||| ||| |||||||| || ||| | Sbjct 114290 AATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCT 114231 Query 27464 GTGATAGCATTGCAAATTTG--AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || ||| | | | ||| ||| | || | || |||||||| || ||||| ||||| Sbjct 114230 CAGACAGCTTGGAGGACTTGTCAAGTCCCAA-TACAAGACAAGGAAGGTATTCCCCCAGA 114172 Query 27522 CCAGCAGCGTCTAATTTTTGCTG-GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||| ||| | | |||||| | |||| || | || |||| |||||| || | ||||| Sbjct 114171 CCAGCAACGTTTGA-TTTTGCAGCGTAAACAGTTGGAAGATGGTCGTACTCTCG-AGACT 114114 Query 27581 ATAA-TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || | |||||| || |||||||| | ||||| ||||| | |||||| Sbjct 114113 ACAACAGCTTCAAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGA 114060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/228 (71%), Gaps = 13/228 (6%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTA--CTCTTGAGGTTGAG--- 27459 |||||| || || || ||||| ||||| || ||||| | | ||||||| || ||| Sbjct 113826 AATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCC 113767 Query 27460 TCAGGTGATAGCATTGCAAATT-TGAAGGCTAAAATT--CAGGACAAGGAGGGAATTCCT 27516 |||| |||| || | || | | ||| | || || || |||||||| || ||||| Sbjct 113766 TCAGAATATAG--TTCCGAACTGTCAAGTCGAAGATATACAAGACAAGGAAGGTATTCCC 113709 Query 27517 CCAGACCAGCAGCGTCTAATTTT---TGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573 ||||||||||| ||| | ||||| || |||| || | || |||| ||| || || Sbjct 113708 CCAGACCAGCAACGTTTGATTTTGCATGGGAGTAAACAGTTGGAAGATGGTCGCACTCTC 113649 Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 ||||||| || | |||||||| || |||||||| | || |||||| Sbjct 113648 TCAGACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTGTTGCGT 113601 >seq58 Length=124683 Score = 123 bits (136), Expect = 3e-23 Identities = 140/187 (75%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| ||||| |||||||| |||||| | || |||||| | || | |||| ||| Sbjct 62789 AGACACTTACTGGCAAGACCATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAACG 62730 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||| | ||||| || |||||||||||||||||||| || || |||||| | || |||| Sbjct 62729 TAAAGTCCAAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGATATTTG 62670 Query 27542 CTGGTAAGCAACTCGAGGATGATCGT------ACCCTAGCAGACTATAATGTCCAAAAGG 27595 | || |||||| | || || | |||| || ||| | ||||||||| | ||||||| Sbjct 62669 CAGGCAAGCAATTGGAAGA-GCTCGTAGAAGAACTCTATCGGACTATAATATACAAAAGG 62611 Query 27596 AATCCAC 27602 |||| || Sbjct 62610 AATCTAC 62604 >seq72 Length=85273 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64705 TCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCA 64764 ||||||| | | ||||| | ||||||||| || |||||||| || || || || || Sbjct 75790 TCGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCC 75731 Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824 || ||||| || || ||| | |||||| | || || |||||||| || | ||||| ||| Sbjct 75730 TTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAAC 75671 Query 64825 GAGCTGATCTCTCGGGACGAGGG 64847 |||||||| || |||| ||||| Sbjct 75670 GAGCTGATTTCAAGGGATGAGGG 75648 >seq89 Length=114172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | |||||||| || ||||| || ||||||||||| || || ||||| | Sbjct 97118 AGCGTCTGGTTGCTTTTGCAGCGGTCGAAGGGATATTCTTTTCTGGTTC-TTTTGTTCCA 97060 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | || ||| | || || ||||| ||||||| || ||| | ||||| || ||| |||| | Sbjct 97059 TATTTTGGTTGAAGAAACGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATAT 97000 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 | || || || || | || |||||||| Sbjct 96999 CACGAGATGAAGGCTTGCATTGTGAATTTGC 96969 >seq27 Length=182400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 27445 ACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAG 27504 || ||||| || ||| | || ||||| | ||||| ||| | || || ||||||||| Sbjct 135587 ACGCTTGAAGTGGAGCCTTCAGACAGCAT-GAGAATTTCAAGTC-AAGATACAGGACAAG 135530 Query 27505 GAGGGAATTCCTCCAGACCAGCAGCG-TCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 || | |||||||||||| | ||| || | | | |||||||| |||||||| || | || Sbjct 135529 GAAGAAATTCCTCCAGATCGGCAACGTTTTTAAATTTGCTGGAAAGCAACTAGAAGCCGA 135470 Query 27564 TCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||| | || |||||||||| | ||||||| || | ||||| Sbjct 135469 TCGCATTCTTCCAGACTATAAGATTCAAAAGGTGTCTGCCCTTCA 135425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309565921040