Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq36 100 2e-16 seq77 86.0 4e-12 >seq36 Length=139094 Score = 100 bits (110), Expect = 2e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| ||||| || || || |||||||||||| ||||| |||||||| || || | Sbjct 92206 ACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACC 92265 Query 34551 GTCTTC-AAGTTGTTTACCGGCAAATAT-TAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||| |||||| || || |||||||| ||||| || ||||| || || | ||| ||| Sbjct 92266 ATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCC 92325 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 92326 TTGTCTTGTATCTT 92339 >seq77 Length=161124 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTA-AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||| ||||| | |||||||||||| || ||||| ||||||||||||||| || |||| Sbjct 113588 GCCACCTCTTCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTG 113647 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCA---AATATTAAACGCTGTTGGTCCG 34594 | || || || | ||||| | ||||||| || || || ||||| || ||||| | Sbjct 113648 AGAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGCAAAATCAAACGTTGCTGGTCTG 113707 Query 34595 GCGGCACTCCCTCCTTGTCT 34614 | || | || ||||||||| Sbjct 113708 GGGGAATACCTTCCTTGTCT 113727 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTG-AATGTTATAATCT-G 34537 || || || ||||| || ||||| |||||||| ||||||||| |||||| || ||| | Sbjct 114521 CCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCTCG 114580 Query 34538 AAAGTGTTCGCTCGT--CTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | |||| || | | |||| | |||||||| ||||| || ||||| || ||||| || Sbjct 114581 AGAGTG--CGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGG 114638 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTC 34653 || | || ||||||||| ||||| || | | | ||| || ||| | | Sbjct 114639 GGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGC 114698 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| | || || || || || || | || || || || |||||||| Sbjct 114699 TCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729151215261