Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq77 138 1e-27 seq36 132 4e-26 seq58 122 8e-23 seq103 93.3 4e-14 >seq77 Length=161124 Score = 138 bits (152), Expect = 1e-27 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| ||||| || || ||| | ||||||||||||||||| || || Sbjct 114751 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTCA 114692 Query 27048 GACTCGATTGAGATG--GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 || | ||||||| | ||||| || || |||||||| ||||| || || || || | Sbjct 114691 GATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114632 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACA-GTTCGACCGTTTCCGATTAC 27164 | || ||||| || | || || ||||| ||||||| | | ||| | | || ||| Sbjct 114631 AGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCACTCTCGAGACTAC 114572 Query 27165 AACA-TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||||||||||| || | || ||||| || ||| | ||||||| || Sbjct 114571 AACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACGTCTAAGGGGTGGAAT 114518 Score = 111 bits (122), Expect = 1e-19 Identities = 169/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA--CTCTTGAAGTGGAACCGT 27045 ||||||||||| ||||| ||||| || || ||| | | | ||||||||||||| || | Sbjct 114059 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 114000 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | ||||| ||||| || || |||||||| ||||| || || || || | Sbjct 113999 CAGACACTATTGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 113940 Query 27106 AACAGCGTTTAATAT---ACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| || | | || ||||| |||||||| || || | || || | Sbjct 113939 AGCAACGTTTGATTTTGCAGCTTGGGAAACAGTTGGAAGATGGTCGTACTCTCTCAGACT 113880 Query 27163 ACAACA--TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||| ||||||||| || | || ||||| || ||| || ||||||| || Sbjct 113879 ACAACAGCTTC-AAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGAAT 113824 Score = 107 bits (118), Expect = 2e-18 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATT-ACTCTTGAAGTGGAACCGTC 27046 ||||| ||||| || || ||||| || || ||| | ||| |||||||||||||| || || Sbjct 114519 ATGCAAATATTCGTGAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCTC 114460 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAA-ATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||| | | || || || |||||||| ||||| || || || || | Sbjct 114459 AGACACTATTGAAAAACTTTAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114400 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| ||||| || | || || ||||| ||||| | || || | | || |||| Sbjct 114399 AACAACGTTTGATTTT-GCTGGGAAACAGTTGGAGCATGGT-CGTACTCTCGAGACTACA 114342 Query 27166 ACA--TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||||| || | || ||||| || ||| || ||||||| || Sbjct 114341 ACAGCTTCAAAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGAAT 114288 Score = 105 bits (116), Expect = 6e-18 Identities = 170/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA--CTCTTGAAGTGGAACCGT 27045 ||||||||||| ||||| ||||| || || ||| | | | ||||||||||||| || | Sbjct 113825 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 113766 Query 27046 CCGACTCGA-TTGAGATG-GTCAAAC--AAAAAATTCAAGACAAAGAAGGCATACCACCC 27101 | || | | || || ||||| || | || |||||||| ||||| || || || Sbjct 113765 CAGAATATAGTTCCGAACTGTCAAGTCGAAGATATACAAGACAAGGAAGGTATTCCCCCA 113706 Query 27102 GATCAACAGCGTTTAATAT---ACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 || || || ||||| || | | | | ||||| |||||||| || || | || Sbjct 113705 GACCAGCAACGTTTGATTTTGCATGGGAGTAAACAGTTGGAAGATGGTCGCACTCTCTCA 113646 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTG-CGGGGTGGC 27215 || |||||||||||||||||||| || | || ||||| ||||||||| | |||||| Sbjct 113645 GACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTGTTGCGTTTGAAGAGGTGGC 113588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/236 (72%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA-TTACTCTTGAAGTGGAACCGTC 27046 ||||||||||| ||||| ||||| || || ||| | | |||||||||||||||| || || Sbjct 114289 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCTC 114230 Query 27047 CGACTCGATTGAG--ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | ||| | ||| || ||| |||||||| ||||| || || || || Sbjct 114229 AGACAGCTTGGAGGACTTGTC-AAGTCCCAATACAAGACAAGGAAGGTATTCCCCCAGAC 114171 Query 27105 CAACAGCGTTTAATATACGCCG-GCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || ||||| || | || | | ||||| |||||||| | ||| | | || || Sbjct 114170 CAGCAACGTTTGAT-TTTGCAGCGTAAACAGTTGGAAGA-TGGTCGTACTCTCGAGACTA 114113 Query 27164 CAACA--TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||| ||||||||| || | || ||||| || ||| || ||||||| || Sbjct 114112 CAACAGCTTC-AAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGAAT 114058 >seq36 Length=139094 Score = 132 bits (146), Expect = 4e-26 Identities = 171/230 (74%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA--TT--ACTCTTGAAGTGGAACC 27043 ||||||||||||||||| || || ||||||||| | || |||||||||||||| || Sbjct 92428 ATGCAGATATTTGTAAAGACACTTACCGGCAAGACGTGCTTCAACTCTTGAAGTGGAGCC 92369 Query 27044 GTCCGACTCGATTGAGATG-GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || || | ||||||| ||||| || || |||||||| ||||| || || || | Sbjct 92368 TTCAGATACTATTGAGAAATGTCAAGTCCAAGATACAAGACAAGGAAGGAATTCCTCCAG 92309 Query 27103 ATCAACAGCGTTTA-ATATACGCCGGCAAACAA-TTGGAAGACAGTTCGACCGTTTCCGA 27160 | || || ||||| |||| || || || ||| || ||||| || || |||| || Sbjct 92308 ACCAGCAACGTTTTGATATTTGCTGGAAAGCAACTTAGAAGATGGTCGTACTCTTTCAGA 92249 Query 27161 TTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || || |||||||||||||| ||| | || ||||| ||||||||| ||| Sbjct 92248 CTATAATATTCAAAAGGAGTCTACCCTTCACTTGGTATTGCGTTTGAGGG 92199 Score = 127 bits (140), Expect = 2e-24 Identities = 176/239 (74%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATT-ACTCTTGAAGTGGAACCGTC 27046 |||||||||||||| || || || || |||||| | ||| |||||||||||||| || || Sbjct 92018 ATGCAGATATTTGTGAAGACACTTACAGGCAAGACCATTCACTCTTGAAGTGGAGCCTTC 91959 Query 27047 CGACTCGATTGAGATGGTCAAA-CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||||| ||||| | || || ||||| || ||||| || || || || | Sbjct 91958 AGACACTATTGAGAACGTCAAGTCCCAAGATACAAGATAAGGAAGGAATCCCTCCAGACC 91899 Query 27106 AACAGCGTTTA-ATATACGCCGGCAAACAATTGG----AAGACAGTTCGAC-CGT---TT 27156 | || ||||| |||| || || || ||| ||| || ||| | | ||| || Sbjct 91898 AGCAACGTTTTGATATTTGCTGGAAAGCAACTGGTCGGAAATCAGCTTTAGTCGTGATTT 91839 Query 27157 CC-GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || |||||||||||||| ||| | || ||||| |||||| || ||||||| Sbjct 91838 CCAGACTATAATATTCAAAAGGAGTCTACCCTTCACTTGGTATTGCGTCTGAGGGGTGG 91780 >seq58 Length=124683 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 26999 TGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGA 27058 |||| | || || || |||||| | |||||| | ||||| || || |||||| | ||||| Sbjct 62794 TGTATAGACACTTACTGGCAAGACCATTACTTTGGAAGTTGAGCCTTCCGACACTATTGA 62735 Query 27059 GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAAT 27118 | || || ||||| |||||||| || || || || ||||||||||||||||| || Sbjct 62734 AAACGTAAAGTCCAAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGAT 62675 Query 27119 ATACGCCGGCAAACAATTGGAAGACAGTTCG-------ACCGTTTCCGATTACAACATTC 27171 || || ||||| |||||||||| || ||| || | || || || || || | Sbjct 62674 ATTTGCAGGCAAGCAATTGGAAG--AGCTCGTAGAAGAACTCTATCGGACTATAATATAC 62617 Query 27172 AAAAGGAGTCGACCTTACATTTGGT 27196 ||||||| || ||||| || ||||| Sbjct 62616 AAAAGGAATCTACCTTGCACTTGGT 62592 >seq103 Length=203287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTT-------GAAGTGG 27039 |||||| |||||||| ||||| |||| || ||| | | || | | || || | Sbjct 14397 CATGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCG 14338 Query 27040 AACCGTCCGACTCGATTGAGATGGTCAAA-CAAAAAATTCAAGACAAAGAAGGCATACCA 27098 |||| || || | || || | || ||| |||| | ||||||| |||||||| ||||| Sbjct 14337 AACCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCC 14278 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAA--CAATTGGAAGACAGTTCGACCGTTT 27156 || |||||||| | | |||| || || ||| ||| | |||||| | || | | Sbjct 14277 CCTGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGT 14218 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 | || || || ||||||||||| || || || || ||||| ||| | || |||| || | Sbjct 14217 CGGACTATAATATTCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGGTA 14158 Query 27217 T 27217 | Sbjct 14157 T 14157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917763931840