Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq36 114 3e-20 seq77 109 1e-18 seq58 105 2e-17 >seq36 Length=139094 Score = 114 bits (126), Expect = 3e-20 Identities = 155/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA-GCT 210969 |||||| || ||||| ||||| || ||||| || | ||| || | |||||||| | | | Sbjct 92218 GTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTT 92277 Query 210970 GCTTGCCTGCGAAGAT-AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||| || || || || || ||||| ||||| ||||||| |||||||||||| || ||| Sbjct 92278 GCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTATC 92337 Query 211029 TTTTGTTTCACGTTT-TCGATGGTGTCAGAGCTTTCAACCTCGAGAGT----GATCGTCT 211083 || || || ||| || || || || || || || || ||||| | ||||| Sbjct 92338 TTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCT 92397 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || || || ||||||||||| | ||||||| Sbjct 92398 TGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 >seq77 Length=161124 Score = 109 bits (120), Expect = 1e-18 Identities = 165/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGA-TGTTATAATCCGCAAGGGTCCTTCCAT 210960 || ||| | ||| ||||| ||||| ||||| | |||| || || | || || | |||| Sbjct 114535 TAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCAT 114593 Query 210961 --CTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||| || ||||| || || | ||||| ||||| || |||| |||||||| Sbjct 114594 ACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTT 114653 Query 211019 GTCCTGGATCTTTTGTTT--CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||| || ||||| || || || || || || || ||| || || || ||||| Sbjct 114654 GTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTA 114713 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTAC 211125 || ||||| || || ||||||||||| || | ||||| |||| ||||| Sbjct 114714 ATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCA--TTATTGTTAC 114760 Score = 102 bits (112), Expect = 2e-16 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGA--TGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||| | ||||||||| ||||| ||||| | |||| || || | || || | ||| Sbjct 114305 TAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCA 114363 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 | |||| ||| || || || || || | ||||||||||| || |||| ||||||||| Sbjct 114364 TGCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTG 114422 Query 211020 TCCTGGATCTTTTGTTTCACG-TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT-GA 211077 || || ||||| || | | ||||| || ||||| ||| || || || ||||| | Sbjct 114423 TCTTGTATCTTCGACTTAAAGTTTTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGTAAA 114482 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || |||||||| || || | |||||| Sbjct 114483 TGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 Score = 100 bits (110), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTG-GATGTTATAATCCGCAAGGGTCCTTCCAT 210960 || ||| | ||||||||| ||||| ||| | |||| || || | || || | |||| Sbjct 113841 TAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTCTGAGAGAGTACGACCAT 113900 Query 210961 CTTCCAGCTGCTTGCC----TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||| ||| || || ||| || || | ||||| ||||| || |||| |||||| Sbjct 113901 CTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGTCTGGGGGAATACCTTCC 113959 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG-T 211075 ||||| || ||||| || || ||| || ||||| ||| || || || |||| | Sbjct 113960 TTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGCT 114019 Query 211076 GA-TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || | ||||| || || ||||||||||| || | ||||||| Sbjct 114020 GACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 Score = 84.2 bits (92), Expect = 5e-11 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTG-GATGTTATAATCCGCAAGGGTCCTTCCAT 210960 || ||| | ||||||||| ||||| ||| | |||| || || | || || | |||| Sbjct 114075 TAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCAT 114133 Query 210961 CTTCCAGCTGCTTGC-CTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||| ||| || | |||| || || | ||||| ||||| || |||| ||||||||| Sbjct 114134 CTTCCAACTGTTTACGCTGCAAA-ATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTG 114192 Query 211020 TCCTGGATCTTTTGTT-TCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT-GA 211077 || || || || || || || | | |||| ||| || || || ||||| | Sbjct 114193 TCTTGTATTGGGACTTGACAAGTCCTCCAAGCTGTCTGAGGGCTCCACTTCAAGAGTAAA 114252 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || ||||||||||| || | ||||||| Sbjct 114253 TGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114290 >seq58 Length=124683 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA-----TCTTCCAGCTGCT 210972 || || || ||||| || ||||| |||| || || |||| | ||||||| |||| Sbjct 62604 GTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCTCTTCCAATTGCT 62663 Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032 ||||||| || || | || ||||| || ||||||| ||| |||||||| || || || Sbjct 62664 TGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGTCTTGTATTTTGG 62723 Query 211033 GTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 || |||||||| || ||||| || ||||| || | ||| || ||||| || || | Sbjct 62724 ACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGGTCTTGCCAGTAA 62783 Query 211093 GAGTCTTTACA 211103 | |||| |||| Sbjct 62784 GTGTCTATACA 62794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150262358705