Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq77 114 3e-20 seq17 95.1 3e-14 seq36 91.5 4e-13 >seq77 Length=161124 Score = 114 bits (126), Expect = 3e-20 Identities = 166/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACA-TTGTAATCGGCCAAAGTTCTCCCAT--C 225560 ||| | ||||||||| || || ||||| | ||||| || | | ||| | |||| | Sbjct 114538 GACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCATACC 114596 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||| || || || || || | ||||| ||||| || ||||||||||||||||| Sbjct 114597 TTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTC 114656 Query 225621 TTGGATCTTTTGCTTCACAGCT--TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||| ||||| ||| |||||| || || || ||||||| ||||| || | || || Sbjct 114657 TTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATG 114716 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTTA 225727 ||||| || || | ||| |||| ||| | |||| |||| ||||| || Sbjct 114717 GTCTTCCCAGTAAGAGTCTTTACGAATATCTGCA--TTATTGTTACCTA 114763 Score = 109 bits (120), Expect = 1e-18 Identities = 138/185 (75%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA-GCG--AAGATAAGTCGT 225591 ||||| || | | ||| | |||||||| | ||| |||||| || || || | ||| Sbjct 113876 TTGTAGTCTGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAAATCAAACGT 113935 Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || ||||| || |||||||||||||||||||| ||||| ||| |||||||| || ||| Sbjct 113936 TGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTG 113995 Query 225652 TCTGAGGTTTCCACGTCTA-ACGTGA-TCGTCTTGCCCGTCAAAGTTTTTATGAACACTT 225709 ||||||| ||||| || | | ||| | ||||| || || | ||| |||| ||| | | Sbjct 113996 TCTGAGGGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCT 114055 Query 225710 GCATT 225714 ||||| Sbjct 114056 GCATT 114060 Score = 100 bits (110), Expect = 7e-16 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACAT--TGTAATCGGCCAAAGTTCTCCCATCT 225561 ||| | ||| ||||| || || ||||| | | |||| || | | ||| | |||| Sbjct 114308 GACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCATGC 114366 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| |||||||| || || | ||||||||||| || |||||||||||||||||| Sbjct 114367 TCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCT 114425 Query 225622 TGGATCTTTTGCTTCACAG--CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT-GATC 225678 || ||||| ||| | || ||| || |||||||||| ||||| || | || || Sbjct 114426 TGTATCTTCGACTT-AAAGTTTTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGTAAATG 114484 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || | ||| || | ||| | ||||||| Sbjct 114485 GTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 >seq17 Length=139726 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | Sbjct 24959 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 25018 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGT-AGTACTCAGGTGGAATA-TTTACG 7853 |||||| || |||||||||| | |||||| ||| | | | |||| || ||| || ||| Sbjct 25019 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTGATTTCCCAGGCGGGATACTTAACG 25078 Query 7854 CGTTAGCTT 7862 ||||||||| Sbjct 25079 CGTTAGCTT 25087 Score = 93.3 bits (102), Expect = 1e-13 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 |||||||||||||| || || ||||| ||||| || || || |||||||| ||||||||| Sbjct 118681 TGACCATCAGTAATTGAAATTACATTAGTAGGAATGTATGCTGAAACATCTCCTGCTTGT 118622 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 ||||| | || |||||| || || | ||| ||||| |||||| |||| Sbjct 118621 GTTTCTATAATAGGTAAAGCAGTCATACTTCCTCCACC-TAATTTTGATTT 118572 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 6770 AGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAGCA 6827 |||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||||| Sbjct 25625 AGAGGATGATCAGCCACACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAGCA 25567 Query 6828 GTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||| |||| || ||||||||||||||| |||| ||| ||| Sbjct 25566 GTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAAT 25525 >seq36 Length=139094 Score = 91.5 bits (100), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA-GCT 225568 ||| || || || || ||||| | ||| || || | | ||| | |||||||||| | | Sbjct 92218 GTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTT 92277 Query 225569 GCTTCCCAGCGAAGAT-AAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||| ||||| || || || ||||| ||||| || ||||| |||||||||||||| ||| Sbjct 92278 GCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTATC 92337 Query 225628 TTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGT----GATCGTCT 225682 || ||| ||| | || || || ||||| | ||||| || | || | ||||| Sbjct 92338 TTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCT 92397 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| || | || |||| || | |||||| Sbjct 92398 TGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529412321198