Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq72 223 3e-53 seq66 199 3e-46 seq82 197 1e-45 seq89 172 5e-38 >seq72 Length=85273 Score = 223 bits (246), Expect = 3e-53 Identities = 378/539 (70%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAAT-CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 |||| ||||| ||||||| | ||||||||||| || || || |||||| ||||| ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || || || ||||| | |||||||||||| | ||||||||| | ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGC 4717 || || ||||| |||||||| || ||||| ||||| | || | ||||| || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 | || ||||||||| | ||||| || ||||| |||| || ||||||||| | Sbjct 75798 ---GACTC-AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 75853 Query 4778 TATAGCGTTAAA-TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 || || | ||| ||| | ||||| | ||| ||||| ||||| || |||| Sbjct 75854 CATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 75913 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | |||| |||| ||||| |||||||| || || ||||||||||| || || |||| | Sbjct 75914 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 75973 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||| | | |||||| || || |||||||||| | | || || || ||||| | Sbjct 75974 CTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 76032 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 | || ||||| || ||||| |||||||| ||||||| |||| || | | | | Sbjct 76033 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 76092 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATC-AACTTCTTCAACAGTCCAAAACGACGC 5074 ||||||| | |||||| | || || | ||||||| |||||||||| || || Sbjct 76093 TTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 >seq66 Length=178311 Score = 199 bits (220), Expect = 3e-46 Identities = 380/546 (70%), Gaps = 24/546 (4%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTC-------GTTAGA 4597 ||||| |||||||| ||||||||||| || || || ||| |||| | ||| || Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCT--TAA-CAGTCCCATGAGCGTTGGA 8331 Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT-AGCGGCAAATGACC 4656 ||| || || || ||||| | |||||||||||| | ||||||||| || ||| || | Sbjct 8330 AAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAAC 8271 Query 4657 CAGAAAAGAATATGCC-TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCT 4714 | || || ||||| || ||| || || ||||| ||||| | || | ||||| || Sbjct 8270 CCGAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCA 8212 Query 4715 GGCTTTGTCTTTAATCCATTTT--AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATT 4772 | | || ||||||||| | ||||| || ||||| |||| || ||||||||| Sbjct 8211 GAA---GACTC-AATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATT 8156 Query 4773 GTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATT 4832 | || || | |||||| | ||||| | ||| ||||| ||||| || Sbjct 8155 CGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATA 8096 Query 4833 AGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCAT 4892 ||||| |||| |||| ||||| |||||||| || || ||||||||||| || || ||| Sbjct 8095 AGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACAT 8036 Query 4893 CTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATA 4952 | ||||| | | |||||| || ||||||||||||| | | || || || ||| Sbjct 8035 CGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATA 7976 Query 4953 CCGT-CACT--GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-G 5008 || | | || || ||||| || ||||| |||||||| ||||||| |||| || | Sbjct 7975 CCATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCA 7916 Query 5009 CTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAA 5068 | || ||||||||||| |||||| | || || | ||||||| |||||||||| Sbjct 7915 GTCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 Query 5069 CGACGC 5074 || || Sbjct 7855 TGAAGC 7850 >seq82 Length=95658 Score = 197 bits (218), Expect = 1e-45 Identities = 374/540 (69%), Gaps = 13/540 (2%) Strand=Plus/Minus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| ||||| ||||| || ||||||||||| || || || |||||| ||||| |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGAC-CCA 4658 | || || || ||||| | |||||| ||| | ||||||||| | ||| || || Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTCT---TTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 4659 GAAAAGAATATGCCTTCTA-CGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGG 4716 || || ||||| ||||||| | || ||||| ||||| | || | ||||| || | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 4717 CTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGT 4776 | || ||||||||| | ||||| || ||||| |||| || ||||||||| | Sbjct 94580 A---GACTC-AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 94525 Query 4777 ATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 || || | |||||| | ||||| | ||| ||||| ||||| || |||| Sbjct 94524 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 94465 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | |||| |||| ||||| |||||||| || || ||||||||||| || || |||| | Sbjct 94464 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 94405 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTA-AGTTTTCGTTTACTATACCG 4955 |||| | | |||||| || || |||||||||| | | | | | | || ||||| Sbjct 94404 CTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACCA 94346 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 || || ||||| || ||||| |||||||| ||||||| |||| || | | | Sbjct 94345 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 94286 Query 5016 TTTTTCCAGTGGGGCAAATC-TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 |||||||| | |||||| | || || | ||||||| |||||||||| || || Sbjct 94285 TTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGC 94226 >seq89 Length=114172 Score = 172 bits (190), Expect = 5e-38 Identities = 382/560 (68%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAA 4598 |||| | || ||||| ||||||||||| ||||| |||| || | |||| || || ||| Sbjct 96958 ACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGAT-ATCAACTCATTGGAA 97016 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | ||| ||||| || || | || || | ||||||||| | |||| || ||| Sbjct 97017 AAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATAT-GGAACAAAAGAACCA 97075 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCT-GGC 4717 ||||||||||| ||||| || || ||||| || || | || | || | || | Sbjct 97076 GAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACG---CTCGGCAAAACTATGA 97132 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 || ||||||||| || | ||| | || || || || ||||| |||| | | Sbjct 97133 GAACACTCGAATCCATTTCAACGACCAATCCGCCTTCTT-TTCACGCAGGGAAGGTTTTC 97191 Query 4778 TATAGCGTTAAATAATTTA--CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 || || || | | | ||||| | | ||| ||||||| |||||||| || Sbjct 97192 AATGGCAAAGAACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGC 97251 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | ||||||||| || |||| |||||| || || | ||||| || ||||| || | Sbjct 97252 AACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGC 97311 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 ||||| | ||||| |||||| | | || | || | |||||||| || || || || Sbjct 97312 GCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCA 97371 Query 4956 TCACTG--GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA 5013 | | | || ||||| || |||||||| || ||||| |||| |||||| || || || Sbjct 97372 TACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAA 97431 Query 5014 G-TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA-AAACGA 5071 | || ||| | |||| |||| || || || |||||||| || ||||| |||| | Sbjct 97432 GCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTA 97491 Query 5072 CGCTTCCGCTTTTTTGTACA 5091 ||||| || |||||||| Sbjct 97492 -GCTTCTGCACGTTTGTACA 97510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048991053961