Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq74 156 6e-33 seq72 156 6e-33 seq82 141 1e-28 seq66 131 2e-25 seq89 122 1e-22 >seq74 Length=163707 Score = 156 bits (172), Expect = 6e-33 Identities = 487/740 (66%), Gaps = 18/740 (2%) Strand=Plus/Plus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||| | ||| || ||||||| | ||||||||| ||| ||||||| || Sbjct 151644 TTTCATACTTTTCATAAAGTTGTTCAAAAGCTTCTCCCCAACAATCTGCCAATCCTGGAG 151703 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||||| || || | || ||| | ||||| | ||||| |||||||| | || Sbjct 151704 CTTCATTGGGACAAAATAAACTCCACTTTTCATCTCTTTCTACTCGCTTCATAAACAAAT 151763 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | || | ||||| | || ||||| |||||| | || || ||||| ||||| ||||| Sbjct 151764 CGGGAACCCATAAACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTTCCATGATTCT 151823 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 || | | ||| | |||||| | | || | |||||| || || | ||| || || | | Sbjct 151824 TTCTCAAATCTAAAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAG 151883 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 |||| || || ||||| ||||| | |||||| || || | |||| | |||| | Sbjct 151884 CTCCTTTTCTCTTTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTAAATACTCGAA 151943 Query 78202 ACATTGG-AATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 ||| || || ||| || || || |||||||| || || |||||| | | || Sbjct 151944 GCATAGGGAACAATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGATTTGGTAGCT 152003 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 ||||| | || | | || || || || || | ||||| || | ||| || | Sbjct 152004 CGAATGTCGTGAACTGCCAATCCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTC 152063 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||| || || || || ||| ||| ||| |||| | || | ||||| | Sbjct 152064 TTCAAAGTATCATAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAA 152123 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTA-AATAATGTCGGAGATGCATGCGTAAACCA 78439 || | ||| | || || || ||||| || || || || || ||||||||||| | Sbjct 152124 GATAACTGAGGTCGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCATGCGTAAAATA 152183 Query 78440 TTTTTCAG--AAAGTAGATTGTATGT-TTCAATAGCTGATTCTATGTC---CCATTGATG 78493 |||| || || ||| || || || | ||||| | | ||| | ||| || ||| || Sbjct 152184 TTTTCGAGACAATGTA-ATCATAAGTCTCCAATA-CAGCTTCCAAGTCCAGCCCTTG-TG 152240 Query 78494 AATTCCTAC--CGCTA--CACGCATCAACATA--TGCTGAGGTCTTTCAACCGTCTTATT 78547 ||| ||||| ||| | | || ||||||| || || |||| ||| || || Sbjct 152241 AATACCTACAGCGCAACTCTCGGGCCAACATATGTGTTGGGGTCGTTCCACTACTTTGCC 152300 Query 78548 ATTTATTTTCAA-CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 78606 || | | ||| || | || ||||| || || || ||||| || | || |||| Sbjct 152301 ATCCACTCGCAAGCACTGAGGAACGCTCCAACGTCTTGAACCCAAAGTAATCATAGGAAA 152360 Query 78607 AGTCTCTCTCGTAAATAATA 78626 |||||| || ||||||||| Sbjct 152361 AGTCTCGATCATAAATAATA 152380 >seq72 Length=85273 Score = 156 bits (172), Expect = 6e-33 Identities = 358/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAAT-CACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||||||||||||| | ||||| | ||| ||||| || ||| | ||||| |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | || ||||| || || | ||||| | ||||||||| | || || || || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 ||||| |||||||| || ||||| || || | || | | || | Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAAGACTC 75802 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | ||||| | || ||||||| | ||| || ||| ||| || || | Sbjct 75803 AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTC 75862 Query 48377 AAAGAGAA--AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 |||| || || |||| | || |||| | | || || || || | ||| |||| Sbjct 75863 AAAGTAAACGAGCCTTTTCCTGAGC-ATCTCTTATATATGTGTCGATAAGTAGAGAATAC 75921 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 |||| || || |||||||| ||||| ||||||||||| || ||||||| ||||| | Sbjct 75922 GTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGA 75981 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 || || || ||| || ||||| ||| || | |||||| || || ||||| | | Sbjct 75982 ATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAA 76040 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||| ||||| |||||||| ||||| | ||| | | ||||| || ||||| Sbjct 76041 GCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAA 76100 Query 48615 TCATTGATATCTTTTGATATATC-TACTTCTTCAGCTGTCCAAAATGATGCCT 48666 || | | ||| ||| | || | ||||||||| ||||||||||| |||| Sbjct 76101 TCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGCCT 76153 >seq82 Length=95658 Score = 141 bits (156), Expect = 1e-28 Identities = 359/535 (67%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||||||||| || ||||| | ||| ||||| || ||| | ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAG--ATCCAGAAA 48255 | || ||||| || || | |||| | ||||||||| | | |||| |||| || | Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAA-CAAAAGGAATCCCGAGA 94637 Query 48256 AGAATATGCCTTCTA-CGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 | ||||| ||||||| | || |||||||| || | || | | || Sbjct 94636 AAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAAGAC 94577 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||| | ||||| | || ||||||| | ||| || ||| ||| || || Sbjct 94576 TCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCT 94517 Query 48375 TTAAAGAGAA-AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 | ||| | | || |||| | || |||| | | || || || || | ||| ||| Sbjct 94516 TCAAATAAACGAGCCTTTTCCTGAGC-ATCTCTTATATATGTGTCGATAAGTAGAGAATA 94458 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | |||| || || |||||||| ||||| ||||||||||| || ||||||| ||||| | Sbjct 94457 CGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGG 94398 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCT-CATTTACTATTCCATCACTAG 48552 || || || ||| || ||||| ||| || | ||||| | || || ||||| | Sbjct 94397 AATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGG 94339 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 |||||| ||||| |||||||| ||||| | ||| | | ||||| || |||| Sbjct 94338 AAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCC 94279 Query 48613 AGTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | || | | ||| ||| | || | ||||||||| ||||||||||| |||| Sbjct 94278 AATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCCT 94224 >seq66 Length=178311 Score = 131 bits (144), Expect = 2e-25 Identities = 238/342 (70%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA-AGtt 48388 ||||| | || ||||||| | ||| || ||| ||| || || | ||| | | || Sbjct 8188 GCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAATAAACGAGCC 8129 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 |||| | || |||| | | || || || || | ||| |||| |||| || || || Sbjct 8128 TTTTCCTGAGC-ATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGAT 8070 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 |||||| ||||| ||||||||||| || ||||||| ||||| | || || || ||| Sbjct 8069 ATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATCCCG 8010 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT-CACT--AGCAGCAAAAAATGC 48565 |||||||| ||| || | |||||| || || |||| | || | |||||| ||||| Sbjct 8009 ACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATACTCTGAGGAAGCAAAGAATGC 7950 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC-AGTTTATTCCAGTCATTGATAT 48624 |||||||| ||||| | ||| | | |||| | ||| |||||||| | | || Sbjct 7949 CAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTTCCAGTCTTCCAAAT 7890 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | ||| | || | ||||||||| ||||||||||| |||| Sbjct 7889 CACCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCCT 7848 >seq89 Length=114172 Score = 122 bits (134), Expect = 1e-22 Identities = 299/444 (67%), Gaps = 17/444 (4%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| |||||||| | |||||||||| || || || || ||||| || || Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| | || ||||| || | ||||||||| | | ||||| |||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC--TGGCTTCGTTGTGTA 48318 || ||||| || || ||||| || || | ||| | ||| || | | | | Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACT-CGAA 97143 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| | |||||| |||||||| || || || || | |||| || || || Sbjct 97144 TCCATTTCAACGACCAATCCGCCTTCTT-TTCACGCAGGGAAGGTTTTCAATGGC---AA 97199 Query 48379 AGAGAAAGt----ttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 ||| | ||| ||||| | | | ||| || || || ||||| | | || Sbjct 97200 AGA-ACAGTCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCAT 97258 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||||| ||||| | |||||| || |||| ||||| || |||||||| | |||||| | Sbjct 97259 ACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGG 97318 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT--CACT 48550 || ||||| || || | || || | ||||| || ||||| || || |||| | Sbjct 97319 GGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGA 97378 Query 48551 AGCAGCAAAAAATGCTAATACATG 48574 ||||||||| || || || || || Sbjct 97379 AGCAGCAAAGAAAGCCAAAACGTG 97402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667784046880