Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq72 201 2e-46 seq82 183 4e-41 seq66 176 6e-39 seq89 145 1e-29 >seq72 Length=85273 Score = 201 bits (222), Expect = 2e-46 Identities = 367/532 (69%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAAT-CACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 ||||||||||||| | ||||| | || ||||| || ||| | ||||| |||||||| Sbjct 75623 AAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGT 75682 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | || ||||| || || | |||||| | ||||||||| | || || || || || Sbjct 75683 CAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCCGAGAA 75742 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||||| |||||||| || || || || || || | || | | ||| | | Sbjct 75743 AAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAAGACTC 75802 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||| | ||||||| | || || |||| | ||| || ||| ||| || || | Sbjct 75803 AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTC 75862 Query 46866 AAAGAGAAAGttt-ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 |||| || | ||||| | | |||| | | |||||| || || | ||| |||| Sbjct 75863 AAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACG 75922 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 |||||||||| || ||||| || || ||||||||||| || ||||||| |||||||| || Sbjct 75923 TTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAA 75982 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 | || || || || ||||| ||| | | |||||| || || ||||| | || Sbjct 75983 TTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAG 76041 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 |||| |||||||||||||| ||||| | |||||| | ||||| || ||||| | Sbjct 76042 CAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAAT 76101 Query 47105 CATTGATATCTTTTGATATATC-TACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | | ||| ||| | || | ||||||||| ||||| ||||| |||| Sbjct 76102 CTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGCCT 76153 >seq82 Length=95658 Score = 183 bits (202), Expect = 4e-41 Identities = 366/534 (69%), Gaps = 10/534 (2%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||||||||| || ||||| | || ||||| || ||| | ||||| |||||||| Sbjct 94752 AAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTC 94693 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG--ATCCAGAAA 46744 | || ||||| || || | |||| | ||||||||| | | |||| |||| || | Sbjct 94692 AAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAA-CAAAAGGAATCCCGAGA 94637 Query 46745 AGAATATGCCTTCTA-CAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA 46803 | ||||| ||||||| | || || ||||| || || | || | | ||| | Sbjct 94636 AAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGAAGAC 94577 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | |||||| | ||||||| | || || |||| | ||| || ||| ||| || || Sbjct 94576 TCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCT 94517 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | ||| | | ||||| | | |||| | | |||||| || || | ||| |||| Sbjct 94516 TCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATAC 94457 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 |||||||||| || ||||| || || ||||||||||| || ||||||| |||||||| | Sbjct 94456 GTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGA 94397 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT-CATTCACTATTCCATCACTAGC 47042 || || || || || ||||| ||| | | ||||| | || || ||||| | Sbjct 94396 ATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGGA 94338 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||| |||||||||||||| ||||| | |||||| | ||||| || ||||| Sbjct 94337 AGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCA 94278 Query 47103 GTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 || | | ||| ||| | || | ||||||||| ||||| ||||| |||| Sbjct 94277 ATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCCT 94224 >seq66 Length=178311 Score = 176 bits (194), Expect = 6e-39 Identities = 370/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA--ATT--CGTTAGAAAA 46682 |||||||||||||| ||||| | || ||||| || | | || |||| ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAG 46741 ||| | || ||||| || || | |||||| | ||||||||| | |||| | || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 46742 AAAAGAATATGCC-TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 | || ||||| || ||| || || || || || || || | || | | ||| | Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA 8209 Query 46801 TTATGAATCCACCTTT--GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858 | |||||| | | ||||||| | || || |||| | ||| || ||| ||| | Sbjct 8208 GACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCA 8149 Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 | || | ||| | | ||||| | | |||| | | |||||| || || | ||| Sbjct 8148 TTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAG 8089 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 |||| |||||||||| || ||||| || || ||||||||||| || ||||||| ||||| Sbjct 8088 AATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGCTT 8029 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT-CA 47037 ||| ||| || || || |||||||| ||| | | |||||| || || |||| | Sbjct 8028 CAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATACT 7969 Query 47038 CT--AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGT 47094 || | |||||| |||||||||||||| ||||| | |||||| | |||| | | Sbjct 7968 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 7909 Query 47095 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 || |||||||| | | ||| ||| | || | ||||||||| ||||| ||||| ||| Sbjct 7908 TTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAGCC 7849 Query 47155 T 47155 | Sbjct 7848 T 7848 >seq89 Length=114172 Score = 145 bits (160), Expect = 1e-29 Identities = 304/443 (69%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| |||||||| | ||||||||||| || || || || ||||| || || Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| | || || || || | ||||||||| | | ||||| |||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATAT-GGAACAAAAGAACCAGAAAAGAAT 97084 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAA 46807 || ||||| || || || || || || || | ||| | ||| || | || | ||| Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACT-CGAA 97143 Query 46808 TCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||| ||| | | |||||| ||||| || || || || || | |||| || ||| Sbjct 97144 TCCA--TTTCAACGACCAATCCGCCTTCTT-TTCACGCAGGGAAGGTTTTCAATGGCAAA 97200 Query 46866 AAAGA---GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 || | || |||| ||| ||| ||| || ||| || ||||| | | ||| Sbjct 97201 GAACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATATACGTGTCTATCAGCAACGCATA 97259 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || || | ||||| || |||| ||||| || |||||||| | ||||| | Sbjct 97260 CATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGGG 97319 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT--CACTA 47040 | ||||| || || | || || | | ||| || |||||||| || |||| | | Sbjct 97320 GACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGAA 97379 Query 47041 GCAGCAAAAAATGCCAATACATG 47063 |||||||| || ||||| || || Sbjct 97380 GCAGCAAAGAAAGCCAAAACGTG 97402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933357333440