Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq17 423 2e-113 >seq17 Length=139726 Score = 423 bits (468), Expect = 2e-113 Identities = 731/1039 (70%), Gaps = 25/1039 (2%) Strand=Plus/Plus Query 185952 AGAGGATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTG-TGGG 186010 ||||| | |||||| | | ||||| ||||| ||||| || |||||||| ||| | || Sbjct 27222 AGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGG 27281 Query 186011 CTGGTCTGGATT-ACTTCTTTTTCCCACTGCTTATA---TGGCAATTGGTGGCTGGCTTA 186066 ||||| || || | || |||||| | | || | | || | || | ||| ||| Sbjct 27282 ATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTA 27341 Query 186067 CTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGG 186126 | || ||||| |||||||| |||||||| || || || || |||||||| | || | Sbjct 27342 CAGGTACAAC-TTTGTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAG 27400 Query 186127 GTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTC 186186 | ||||||| | || || ||||| |||| ||||| | |||||| || ||| | Sbjct 27401 GATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT- 27456 Query 186187 TTCTACTTT--GGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGG 186244 | ||| ||| |||| || || ||||||| ||| | | | |||| ||| |||| || Sbjct 27457 TACTATTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGG 27516 Query 186245 ACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCA-TAGGTTTCATGCTGCGAC 186303 | |||| ||| || | || || || |||| | | ||||||| | | || | Sbjct 27517 TTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTC 27575 Query 186304 AGTTTGAAATCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTC 186363 | |||||||| | | ||||| || | ||||| ||||| || |||||||| || | Sbjct 27576 AATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGAC 27635 Query 186364 CTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCT 186423 | || || || |||||| ||||| || || || || |||||||| | ||||| | Sbjct 27636 CAATTGCAGT-TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT 27694 Query 186424 TCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCC 186483 ||||| |||||||| ||||| ||||||||||| | || || | ||||| |||| Sbjct 27695 --GCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCC 27751 Query 186484 ACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTC 186543 | |||||||| || ||||||||||| ||||||||||| || || || |||||||| || Sbjct 27752 ATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCAT 27811 Query 186544 TGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAG 186603 | ||| || || ||||| | |||||||||||||| | | ||||||||||||| | Sbjct 27812 TATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTG 27871 Query 186604 CAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTG 186663 | || || |||| ||| || | || ||| ||||||||| ||||| ||||| || | Sbjct 27872 CTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAG 27931 Query 186664 CGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATT 186723 | || | || |||||||| || || || |||| ||| ||||| | ||||| |||| Sbjct 27932 CTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATT 27988 Query 186724 TCTT--CATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGG 186781 |||| ||||| ||||| || |||| || | ||||| ||| ||||| ||||| || Sbjct 27989 TCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGG 28048 Query 186782 TCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGA 186841 ||||| | || | ||||| ||||| || || ||| || | | || |||||||| Sbjct 28049 ACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGA 28108 Query 186842 TCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTG 186901 ||| || || || || || ||||| || ||| | || | ||||||||| || | || || Sbjct 28109 TCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATG 28168 Query 186902 GATGGCACCAGTGGA-TCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAA 186960 ||||||| || || ||||||||||||||| |||||||| || || || || || ||| Sbjct 28169 GATGGCAACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCAC 28227 Query 186961 GAGGCAACGCTCTGTGATA 186979 | || || || || | ||| Sbjct 28228 GTGGAAATGCCCTTTAATA 28246 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 170976 ACTTTTGAATGTGCTGAAGA-TCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGA 171034 ||| |||| ||| |||| || ||||||||| | ||||| ||||||||| |||||| || Sbjct 56894 ACTATTGAGTGTCCTGATGAATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGA 56953 Query 171035 TTTGAACTATTCGTGTCGTGCTGGT--GCTTGTTCGACCTGTGCTGGGAAAAT-TGAGAG 171091 | | |||||| ||| | || || || ||||| || || || || ||| | | ||| Sbjct 56954 TCTCCCCTATTCTTGTAGAGCAGGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAA 57013 Query 171092 TGGTTCTGTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTT 171151 || || |||||||| ||||| || || | ||||||||||| | || |||| || Sbjct 57014 -GGAGAAGTAGATCAATCTGATCAGTCCTTT-TAGATGATGATCAAGTAAAAGCAGGATT 57071 Query 171152 CATTCTGACCTGCGTCTCATATCCTAC 171178 | || ||||| || |||||||||| Sbjct 57072 TGTACTAACCTGTGTTGCATATCCTAC 57098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622069490222040