Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq17 432 4e-116 >seq17 Length=139726 Score = 432 bits (478), Expect = 4e-116 Identities = 735/1042 (71%), Gaps = 35/1042 (3%) Strand=Plus/Plus Query 165144 AGGGGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTG-TTGG 165202 || |||| |||||| | |||| || ||||| ||| | || || || || ||| |||| Sbjct 27222 AGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGG 27281 Query 165203 CTGGTCTGG--------ACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGG 165254 ||||| || |||| | ||| |||| | | || || || || | |||| Sbjct 27282 ATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTA----GCCCTAGGCGCTTGG 27337 Query 165255 CTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTT 165314 |||| || || ||||| || || |||||||||||| || | || ||| ||| | Sbjct 27338 TTTACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTA 27396 Query 165315 GAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTC 165373 || || || || ||| | ||||| ||||| || | || ||| | |||||| || || Sbjct 27397 GAAGGATGTAA--TTTTTAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTC 27454 Query 165374 TCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGG 165433 | || || ||||||| || || ||||||| || || | | ||||| ||| |||| Sbjct 27455 ATTACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGG 27513 Query 165434 GGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA-TAGGTTTCATGCTT- 165491 || | ||||| ||| || | || || || |||| | ||| ||||||| || || Sbjct 27514 AGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTA 27571 Query 165492 CGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCT 165551 || || |||||| | ||| || | | || ||| | || || ||||| || ||||| || Sbjct 27572 CGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCG 27631 Query 165552 GGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGG 165611 || || ||||| || || ||| || |||||||| ||||| || |||||| | ||| Sbjct 27632 GGACCAATTGCAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGG 27690 Query 165612 TTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGG 165671 || | | | || || || || ||||| ||||| |||| | | || | ||||| Sbjct 27691 TTTTGCTCCTAGT--TTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGC 27747 Query 165672 TTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGA 165731 |||||||||||||| | ||||| || || |||||||| || || || || | || ||| Sbjct 27748 TTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGA 27807 Query 165732 GCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAA 165791 ||||| | | || |||||||| | || ||||| ||||| || | ||||||||| ||| Sbjct 27808 GCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAA 27867 Query 165792 CAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTC 165851 || || ||||||| ||| ||| || || ||| ||||||||||| ||||| Sbjct 27868 GCTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTT 27927 Query 165852 ACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTT 165911 || ||||| ||||| ||||| || ||||| ||| ||||||| ||||| | ||||| Sbjct 27928 ACAGCTAATCGTTT-TGGTCACAAATTTT-GGTGTTGCTTTTCT-AATAAAAGATGGCTA 27984 Query 165912 CACTTCTTT--ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCA 165969 || |||||| ||||| ||||| || || | ||| | |||||||||||||||||||| | Sbjct 27985 CATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTA 28044 Query 165970 TTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTA-GAGCTGCT 166028 | || || ||| | ||| | ||||| |||||||| || ||||| || |||| | || || Sbjct 28045 TAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGA-ATTACGTGCCGCA 28103 Query 166029 GAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGT 166088 ||||||||||| |||||||| || ||||| ||||| | ||||| |||||||| | | Sbjct 28104 GAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGA 28163 Query 166089 GCCTGGTTGGCTCCTGTAGA-CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTT 166147 || ||| |||| | ||| ||||| ||||| || ||||| ||||| || || || || Sbjct 28164 GCATGGATGGCAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTT 28222 Query 166148 GCCAAGAGGCAACGCACTTTAA 166169 ||| | || || || |||||| Sbjct 28223 ACCACGTGGAAATGCCCTTTAA 28244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557653584430440