Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 3e-14 seq36 87.8 4e-12 >seq77 Length=161124 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGA-TGTTGTAATCGGCTAAAGTTCTCCCAT--CTT 151953 |||| || ||||||||||| ||||| | ||||||| || | | ||| | |||| ||| Sbjct 114541 CAAG-TGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCATACCTT 114598 Query 151954 CTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | | ||| || || || || | | |||||||| | | || |||||||| |||| Sbjct 114599 CCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTT 114658 Query 152014 GAATTTTTTGTTTGACAG--TCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 | || || ||||||| |||| | | ||||| ||| |||||||||||||| || Sbjct 114659 GTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATGGT 114718 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| ||||| | ||||||| Sbjct 114719 CTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114752 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/220 (72%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTG-GATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||| |||||||||||||| ||| | ||||||| || | | ||| | |||||||| Sbjct 114081 CAAG-TGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCATCTTCC 114138 Query 151956 AGGCTTTTCC-CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| | | || || || | | |||||||| | | || |||||||| ||||| Sbjct 114139 AACTGTTTACGCTGCAAAATCAAACGT-TGCTGGTCTGGGGGAATACCTTCCTTGTCTTG 114197 Query 152015 AATTTTTTGTTTGACA-GTC-TCTACGCTGTCTGAACTCTCTACTTCAAGAGT-AATAGT 152071 ||| || |||| ||| || | ||||||||| ||| ||||||||||| ||| || Sbjct 114198 TATTGGGACTT-GACAAGTCCTCCAAGCTGTCTGAGGGCTCCACTTCAAGAGTAAATGGT 114256 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || || |||||||| ||||| | ||||||| |||| Sbjct 114257 CTTCCCAGTAAGAGTCTTTACGAATATCTGCATTCCACCC 114296 >seq36 Length=139094 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 151983 TGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTG-TTTGACAGTCTCTACGCT 152041 |||||||| | | |||||||||||| ||||| || || | ||||| |||| | | Sbjct 91895 TGCTGGTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGT 91954 Query 152042 GTCTGAACTCTCTACTTCAAGAGT-AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCT 152100 ||||||| ||| ||||||||||| ||| || ||||| || || |||||||| || | || Sbjct 91955 GTCTGAAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCT 92014 Query 152101 GCATT 152105 ||||| Sbjct 92015 GCATT 92019 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| ||||| || || || || | | ||| | |||||||||| Sbjct 92215 CAAG-TGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTA 92273 Query 151957 GGCTT-TTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | | || || || || || || | |||||||| | | ||||||||||| ||||| Sbjct 92274 AGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 92333 Query 152015 AATTTTTTGTTTGACA-GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT--AA--TA 152069 || || |||||| |||| | | |||||| ||| ||||||||||| || Sbjct 92334 TATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCAC 92393 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||| || || | ||||||| Sbjct 92394 GTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819070350507