Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq17 466 2e-126 >seq17 Length=139726 Score = 466 bits (516), Expect = 2e-126 Identities = 744/1043 (71%), Gaps = 25/1043 (2%) Strand=Plus/Plus Query 178826 ACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTG- 178884 |||||| || | || ||| || | ||||| ||||| || |||||||| || || ||| Sbjct 27218 ACAAAGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAA 27277 Query 178885 TTGGTTGGTCAGGTCTTCTT--CTGTTCCCTACTGCTTA--CATGGCACTGGGCGGTTGG 178940 |||| ||||||||| | | || |||| | | || | | | || || |||| |||| Sbjct 27278 TTGGATGGTCAGGTTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGG 27337 Query 178941 CTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTT 179000 | || || ||||| || || || || ||||||||||| || | |||||||| ||| | Sbjct 27338 TTTACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTA 27396 Query 179001 GAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCC 179060 || ||||||||||| | |||||||| ||||||| ||||| | | | ||||| || Sbjct 27397 GAAGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCA 27455 Query 179061 CTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGG 179120 |||| || ||||||| ||||||||||| || ||||| | ||| ||| |||| Sbjct 27456 TTACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGA 27514 Query 179121 GGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCA-TAGGTTTCATGCTT-C 179178 || ||||| | ||| || | || ||||| || | | | ||||||| || || | Sbjct 27515 GGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTAC 27572 Query 179179 GGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTG 179238 | || |||||||| ||| | |||| || ||| | || || |||||||| || ||||| | Sbjct 27573 GTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGG 27632 Query 179239 GTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGT 179298 | |||||||| || ||||| || || ||||| || ||||| || ||||| | |||| Sbjct 27633 GACCAATTGCAGT-TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGT 27691 Query 179299 TCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCT 179358 | |||| || |||||||||||||| || || | || | | || | || |||| Sbjct 27692 T--TTGCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCT 27748 Query 179359 TCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAG 179418 |||| |||||||| | || || ||||| ||||||||||| || || || || || |||| Sbjct 27749 TCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAG 27808 Query 179419 CATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACC 179478 |||| | || || |||||||| || || ||||| || || | |||||||| | || Sbjct 27809 CATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAG 27868 Query 179479 AATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTA 179538 | ||||| |||| || || || |||||| ||| || || ||||| ||||||| Sbjct 27869 CTGCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTA 27928 Query 179539 CTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTAC 179598 | || || ||||| ||||| || || |||||| | | ||| ||||| | ||||||| Sbjct 27929 CAGCTAATCGTTT-TGGTCACAAAT-TTTGGTGTTG-CTTTTCTAATAAAAGATGGCTAC 27985 Query 179599 ATTTCTTT--ATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTAT 179656 |||||||| ||| | ||||| || || | || | ||||| | ||||||||||| Sbjct 27986 ATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTAT 28045 Query 179657 TGGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAG 179715 || |||||| |||| ||| | || ||||| || ||||| ||||| | | || |||| Sbjct 28046 AGGACTTGCA-TTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAG 28104 Query 179716 AGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTG 179775 ||||||| || || || || || ||||| || || | || | ||||||||| || | | Sbjct 28105 AGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAG 28164 Query 179776 CTTGGATGGCACCAGTCGA-TCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTG 179834 | ||||||||| || || ||||||||||||||| |||||||| || || || || || Sbjct 28165 CATGGATGGCAACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTA 28223 Query 179835 CCAAGAGGCAACGCTCTGTGATA 179857 ||| | || || || || | ||| Sbjct 28224 CCACGTGGAAATGCCCTTTAATA 28246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 18369 GGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTG-CCTACGG 18427 |||| |||| ||||||||||||||| ||||||||||||||||||||| | || |||||| Sbjct 46162 GGGTCGGTGCCCGAGTGGTTAATGGGGGCGGACTGTAAATCCGCTGGTTTTGCCCTACGT 46221 Query 18428 GGGTTCAAATCCCTCCCTGCCCA 18450 ||||||||||| ||| ||||| Sbjct 46222 TGGTTCAAATCCAACCCGGCCCA 46244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596306327900720