Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq17 399 3e-106 >seq17 Length=139726 Score = 399 bits (442), Expect = 3e-106 Identities = 724/1035 (70%), Gaps = 37/1035 (4%) Strand=Plus/Plus Query 170595 TTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTG-TGGGCTGGTCTGG 170653 |||||| | | ||||| ||||| ||||||||||| ||||||||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 170654 --------ACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGC 170705 |||| | ||| |||| | | || || | |||| ||| |||| || Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTA----GCCCTAGGCGCTTGGTTTACAGGT 27346 Query 170706 ACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCT 170765 || || |||||||| |||||| || || || | || ||| || | ||||| | Sbjct 27347 ACAAC-TTTGTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 27405 Query 170766 AATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA 170825 ||||| | || || || || |||| ||||| || |||||| || ||| | | ||| Sbjct 27406 AATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTA 27461 Query 170826 CTTT--GGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCT 170883 ||| |||| || || |||| || ||||| | |||| ||| |||| || | | Sbjct 27462 TTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTAT 27521 Query 170884 GGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCA-TAGGTTTCATGCTT-CGGCAGTT 170941 ||| ||| || | || || || |||| | | ||||||| || || || || || Sbjct 27522 GGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATT 27579 Query 170942 TGAAATCAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTAT 171001 |||||| | | ||||| |||||||| || |||||||| ||||| || || || || Sbjct 27580 TGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAAT 27639 Query 171002 CGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGC 171061 || || ||||| || || || || ||||| ||||| || | |||||||| | || Sbjct 27640 TGCAGT-TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GC 27696 Query 171062 ACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAA 171121 ||| |||||||||||||| ||||| | || | | || ||||||| ||||| || Sbjct 27697 TCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAA 27755 Query 171122 CTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCT 171181 |||||| | |||||||| ||||||||||||||||| || || || || || ||||| | Sbjct 27756 CTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATT 27815 Query 171182 TTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAA 171241 | || |||||||| | || ||||| ||||| || | ||||||||| || || || Sbjct 27816 GTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAA 27875 Query 171242 CACCTTTAAGGCATTTGACA-CGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTA 171300 | |||| || ||| ||| | || || ||||| || ||||| ||||| || |||| Sbjct 27876 TA-CTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTA 27934 Query 171301 ATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCT 171360 ||||||| ||||| || | ||||||| | || || ||||| | ||| | ||||||| Sbjct 27935 ATCGTTT-TGGTCACA-AATTTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCT 27991 Query 171361 TT--ATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCT 171418 || ||||| ||||| || || | || | ||| ||| | | || ||||| || || Sbjct 27992 TTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACT 28051 Query 171419 TGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCC 171478 ||| | ||| | | || ||||||||||| ||| || | | || ||||| ||||| Sbjct 28052 TGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCC 28111 Query 171479 AGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGAT 171538 ||| || || || || ||||| || || | || | ||||||||| | | |||||||| Sbjct 28112 AGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGAT 28171 Query 171539 GGCACCAGTAGA-CCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTG 171597 |||| || ||| |||||||||||||| ||||| ||||||||||| ||| |||| |||| Sbjct 28172 GGCAACACAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTG 28230 Query 171598 GCAATGCACTTTGAT 171612 | ||||| |||| || Sbjct 28231 GAAATGCCCTTTAAT 28245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592197533909840