Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq77 131 4e-25 seq36 113 9e-20 seq58 93.3 9e-14 >seq77 Length=161124 Score = 131 bits (144), Expect = 4e-25 Identities = 148/195 (76%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC--TCTAGTTGTTTCCCGGCAAA 282967 ||||| ||||||||||| | || ||||| |||| | || | ||||| || ||||| Sbjct 114559 CTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAA 114617 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG- 283026 ||||||||||| ||||| |||||||| ||||||||||| ||||| | || || | Sbjct 114618 AATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGC 114677 Query 283027 -TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | || ||||| || || | || ||||| ||||| || ||||| || || | |||||| Sbjct 114678 TTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTT 114737 Query 283086 ACGAATATCTGCATT 283100 ||||||||||||||| Sbjct 114738 ACGAATATCTGCATT 114752 Score = 129 bits (142), Expect = 1e-24 Identities = 150/196 (77%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 282909 TCTTTTTGGA--TGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 || ||||| | |||||||||| | || || || |||| ||| | |||||||| |||| Sbjct 114327 TCCTTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCATGCTCCAACTGTTTCCCAGCAA 114385 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTG-CTTTTACG 283025 | ||||||||||||||||| |||||||| ||||||||||| ||||| | ||| | Sbjct 114386 A-ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTAAAGT 114444 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT-GATCGTCTTACCCGTCAAAGTCTT 283084 | || |||||||| || | || ||||| ||||| || ||||| || || | |||||| Sbjct 114445 TTTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTT 114504 Query 283085 AACGAATATCTGCATT 283100 |||||||| |||||| Sbjct 114505 CACGAATATTTGCATT 114520 Score = 125 bits (138), Expect = 1e-23 Identities = 143/188 (76%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 282919 TGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG----GCAAAGATCAAA 282974 |||||||||| | || || || ||||| || | |||||||| ||||| |||||| Sbjct 113874 TGTTGTAGTCTGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAA 113932 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 ||||| ||||| |||||||| ||||||||||| ||||| | || || | || ||| Sbjct 113933 CGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATA 113992 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAG-TGA-TCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 ||||| || | || ||||| |||| ||| | ||||| || || | |||||| ||||||| Sbjct 113993 GTGTCTGAGGGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATA 114052 Query 283093 TCTGCATT 283100 |||||||| Sbjct 114053 TCTGCATT 114060 Score = 104 bits (114), Expect = 5e-17 Identities = 148/202 (73%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTT----CCCGGC 282964 || ||||| ||||||||||| | || ||||| ||||| || | ||||| || || Sbjct 113626 TCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGC 113685 Query 282965 AAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG--GATCTTTGCTTTT 283022 ||| ||||||||||| ||||| |||||||| ||||||||||| ||||| | || Sbjct 113686 AAA-ATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATATCTTCGACTTG 113744 Query 283023 ACGGTATCGA--TAGTGTCCGAAGCTTCGACTTCGAGAG-TGA-TCGTCTTACCCGTCAA 283078 || || || || || || | || ||||| |||| ||| | ||||| || || | Sbjct 113745 ACAGTTCGGAACTATATTCTGAGGGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAG 113804 Query 283079 AGTCTTAACGAATATCTGCATT 283100 |||||| ||||||||||||||| Sbjct 113805 AGTCTTTACGAATATCTGCATT 113826 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 282919 TGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCC-CGGCAAAGATCAAACGT 282977 |||||||||| | || || || ||||| || | ||||| | | ||||| ||||||||| Sbjct 114108 TGTTGTAGTCT-CGAGAGTACGACCATCTTCCAACTGTTTACGCTGCAAA-ATCAAACGT 114165 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC--GGTATCGATAG 283035 || ||||| |||||||| ||||||||||| || | | || || | || | Sbjct 114166 TGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTAT-TGGGACTTGACAAGTCCTCCAAGC 114224 Query 283036 TGTCCGAAGCTTCGACTTCGAGAGT-GATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 |||| || | || ||||| ||||| || ||||| || || | |||||| ||||||||| Sbjct 114225 TGTCTGAGGGCTCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTTACGAATATC 114284 Query 283095 TGCATT 283100 |||||| Sbjct 114285 TGCATT 114290 >seq36 Length=139094 Score = 113 bits (124), Expect = 9e-20 Identities = 147/199 (74%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA-GTTGTTTCCCGGCAAA 282967 || ||||| || || ||||| | ||| || || ||||| |||| |||| || || ||||| Sbjct 92231 TCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAA 92290 Query 282968 GATCAAA-CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC-G 283025 |||||| ||||| ||||| ||||| || ||||||||||| ||||| | || || Sbjct 92291 TATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACAT 92350 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT----GATCGTCTTACCCGTCAAAGT 283081 | || ||||| || |||| || ||||| ||||| | |||||| || || | || Sbjct 92351 TTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGT 92410 Query 283082 CTTAACGAATATCTGCATT 283100 ||| || |||||||||||| Sbjct 92411 CTTTACAAATATCTGCATT 92429 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/153 (76%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 282951 AGTTGTTTCCCGGCAAAGATCAAA-CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| || || ||||| |||||| ||||| ||||| || || || ||||| ||||| Sbjct 91867 AGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTG 91926 Query 283010 GATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGA-TCGTC 283067 ||||| | || ||| | || |||||||| |||| || ||||| ||||||| | ||| Sbjct 91927 TATCTTGGGACTTGACGTTCTCAATAGTGTCTGAAGGCTCCACTTCAAGAGTGAATGGTC 91986 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || | ||||| || |||||||||||| Sbjct 91987 TTGCCTGTAAGTGTCTTCACAAATATCTGCATT 92019 >seq58 Length=124683 Score = 93.3 bits (102), Expect = 9e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || | ||| || || ||||| |||||||| ||||| || ||||| ||||||||| Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| || || | |||||| | || |||||||| |||| || ||||| | ||| || Sbjct 62711 TCTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATG 62770 Query 283065 GTCTTACCCGTCAAAGTCT 283083 ||||| || || | |||| Sbjct 62771 GTCTTGCCAGTAAGTGTCT 62789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737630872518