Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq72 235 6e-57 seq82 223 4e-53 seq66 210 2e-49 >seq72 Length=85273 Score = 235 bits (260), Expect = 6e-57 Identities = 375/532 (70%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAAT-CACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 |||| ||||||||||||| | ||||| | || |||||||| ||||| || || ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 ||||| || |||||||| | |||| ||||| | ||||||||| | | ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 || || || || || || || || ||||| || || |||||| | |||| | ||| | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | ||| |||||||| | ||| || || ||| | | |||| |||| ||| Sbjct 75798 GACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 23740 ATTGCTTTTAAGAGAAA-AGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 ||||||| ||| || || ||||| | | |||| |||||||||| || || |||| Sbjct 75855 ATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 75914 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 | |||| |||| ||||| |||||||| || || |||||||| ||||| ||||||| || Sbjct 75915 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 75974 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||||| | ||||||||| | ||| ||||| || | ||| || ||| |||||||| Sbjct 75975 TTCAGGAATTTGAACATCCCGACAAA-TCTTTCTGCAAGATTCTCCAAAACGATACCATC 76033 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 | ||||||||| || | |||| ||||| || | |||||| | | || || Sbjct 76034 TGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTT 76093 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATC-AACTTCATCAACTGTCCAAAA 24029 ||||||||| | | ||| ||| || || | ||| ||| | |||||||| Sbjct 76094 TTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAA 76145 >seq82 Length=95658 Score = 223 bits (246), Expect = 4e-53 Identities = 374/533 (70%), Gaps = 11/533 (2%) Strand=Plus/Minus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| ||||||||||| || ||||| | || |||||||| ||||| || || |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATG-ATCCG 23619 |||| || |||||||| | |||| |||| | ||||||||| | | ||| | |||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 23620 GAAAAGAAAATACCCTC-AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 || || || || || || ||| || ||||| || || |||||| | |||| | ||| Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAGA 94581 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 | | || ||||||||| | ||| || || ||| | | |||| |||| ||| Sbjct 94580 AGACTC---AATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 94524 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 ||||||| || | | || ||||| | | |||| |||||||||| || || |||| Sbjct 94523 CATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAG 94464 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 | |||| |||| ||||| |||||||| || || |||||||| ||||| ||||||| || Sbjct 94463 AGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTGC 94404 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATT-TTCGTTAACAATACCAT 23917 ||||| | ||||||||| | |||||||| || | ||| | | ||| ||||||| Sbjct 94403 TTCAGGAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACCAT 94345 Query 23918 CACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATT 23977 | | ||||||||| || | |||| ||||| || | |||||| | | || | Sbjct 94344 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 94285 Query 23978 TTTTCCAATCATTAATATC-TTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||||| | | ||| ||| || || | ||| ||| | |||||||| Sbjct 94284 TTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 94232 >seq66 Length=178311 Score = 210 bits (232), Expect = 2e-49 Identities = 375/536 (70%), Gaps = 16/536 (3%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCT--ACTAATCAAT--TCATTAGAAAA 23561 |||||||||||||| ||||| | || |||||||| || | || | || ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT-TGCAGCAAATGATCCGG 23620 ||| || |||||||| | |||| ||||| | ||||||||| | | ||| || || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 23621 AAAAGAAAATACCC-TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 | || || || ||| ||||| || ||||| || || |||||| | |||| | ||| | Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA 8209 Query 23680 TAATCAGAAATCCAttttt--ttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 | || ||||||||| | | ||| || || ||| | | |||| |||| || Sbjct 8208 GACTC---AATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 8152 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 | ||||||| || | | || ||||| | | |||| |||||||||| || || |||| Sbjct 8151 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 8092 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAG 23857 | |||| |||| ||||| |||||||| || || |||||||| ||||| ||||||| | Sbjct 8091 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 8032 Query 23858 CTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCAT 23917 |||||| | ||||||||| | ||||||||| || | ||| || ||| ||||||| Sbjct 8031 CTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 7972 Query 23918 -CACT--AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 | || | ||||||||| || | |||| ||||| || | |||||| | | | Sbjct 7971 ACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCA 7912 Query 23975 A-TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||||||||| || | | ||| ||| || || | ||| ||| | |||||||| Sbjct 7911 ACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487237323800