Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36 96.9 8e-15 seq77 91.5 4e-13 >seq36 Length=139094 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGAT-CACCCTCGAGGTGGAAAGCTCAGA 177982 || || || ||||| || || ||||| || || || ||| || || ||||| ||||| Sbjct 92015 CAGATATTTGTGAAGACACTTACAGGCAAGACCATTCACTCTTGAAGTGGAGCCTTCAGA 91956 Query 177983 CACCATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||| || ||||||||||| | ||||| || || || |||||||||||||| ||||||| Sbjct 91955 CACTATTGAGAACGTCAAGTCCCAAGATACAAGATAAGGAAGGAATCCCTCCAGACCAGC 91896 Query 178042 AACGACTT-ATCTTCGCCGGAAAACAGCT 178069 |||| || || || || ||||| || || Sbjct 91895 AACGTTTTGATATTTGCTGGAAAGCAACT 91867 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 177960 ACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC-GTCAAACAAAAGATTCAGGACAA 178018 || || || ||||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 92385 ACTCTTGAAGTGGAGCCTTCAGATACTATTGAGAAATGTCAAGTCCAAGATACAAGACAA 92326 Query 178019 AGAAGGAATCCCTCCGGACCAGCAACGACTT-ATCTTCGCCGGAAAACAGC-TCGAAGAT 178076 |||||||| ||||| ||||||||||| || || || || ||||| || | | |||||| Sbjct 92325 GGAAGGAATTCCTCCAGACCAGCAACGTTTTGATATTTGCTGGAAAGCAACTTAGAAGAT 92266 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | |||||| | || ||||| | ||||| || || || || || |||| Sbjct 92265 GGTCGTACTCTTTCAGACTATAATATTCAAAAGGAGTCTACCCTTCA-CTTG 92215 >seq77 Length=161124 Score = 91.5 bits (100), Expect = 4e-13 Identities = 158/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||| | || || ||||| || ||||| || || || || || || || || | Sbjct 114762 AGGTAACAATAATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAG 114703 Query 177970 TGGAAAGCTCAGACACCATCGAGAAC--GTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| |||||| || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 114702 TGGAGCCCTCAGATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTAT 114643 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAG--ATGGAAGGACT 178085 || || ||||||||||| | || || || || |||||| | |||| |||| | ||| Sbjct 114642 TCCCCCAGACCAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCACT 114583 Query 178086 CTTGCCGATTATAAC-GTCCAAAAAGAATCAACACTGCATCTTG 178128 || | || || ||| | ||||| || || || || || |||| Sbjct 114582 CTCG-AGACTACAACATTTCAAAAGGAGTCTACTCTCCA-CTTG 114541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729395531698