Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498715.1_202013-11-25] 239 sequences; 10,703,894 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 114 3e-20 >seq2 Length=333263 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | |||| || || ||||| ||||| | Sbjct 298525 CCACCACGGAGGCGGAGGACGAGGTGGAGCGTGGCATCCTTCTGGATGGAGTAGTCCTGG 298466 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| ||| || | || || || | |||||| || ||||| ||| ||||| Sbjct 298465 AGGGTGCGATTGTCCTCGAGCTGCTTGCCGGAGAAGATGAGGCGCTGCTGA---TCTGGC 298409 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||| || || |||||||| ||||| || | ||| | ||| | ||| | | || Sbjct 298408 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGATGTTGTTTATGGTATCTGTGGGCTCA 298349 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 298348 ACCTCAAGGGTGACGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 298299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650787677042