Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498715.1_202013-11-25] 239 sequences; 10,703,894 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 233 2e-56 >seq12 Length=180243 Score = 233 bits (258), Expect = 2e-56 Identities = 736/1126 (65%), Gaps = 26/1126 (2%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT-TTAT 7079 || |||||| ||||| | |||||||| ||||| ||||| |||||||| | |||| || Sbjct 25208 GAGGGCGGCCTGGACAGATGCCCCGTAGGCGACAGCCTCGTCGGGGTTGA-CGTTCTTGC 25266 Query 7080 TCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCG 7139 | || || ||||| || | ||| | ||| || || | |||||||| ||||| | Sbjct 25267 TGAGCTCGCGGCCGTTGAAGAAGTCCCTGAGCATCTGCTGGACCTTCGGGATACGTGTGG 25326 Query 7140 ATCCACCGACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGT 7198 | |||||||| | ||||| |||| || | || | || | | ||| || || || || Sbjct 25327 ACCCACCGACAAGGACGATGTCATGGACGT-CGTTCTTGCCAAGCTTGGAATCGCGGAGA 25385 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 || || || |||| || |||||||| | ||| || || || ||||| || Sbjct 25386 ACGCGATCAACGGGGTCCAGGCACTTACGGAAGAGGTCAATGCAAAGATCCTCGAACTTC 25445 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 || | || ||| || |||| || | ||| ||| | | || || || || || | Sbjct 25446 GCCCTTGTGATGTTAGTGAAGAAGTCTATGCCCTCGAAAAGAGACTCTATCTCGATAGAC 25505 Query 7319 GTTTG-TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 | || || | |||| || | || ||||| ||||||||||| || || || | |||||| Sbjct 25506 GCCTGCTGGC-TCGAGGAAAGAGTGCGCTTAGCGCGCTCACAGGCAGTGCGCAGACGACG 25564 Query 7378 AAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAA 7437 | || | | ||||||| ||||| ||| || || |||||||| | ||| Sbjct 25565 CATCGCCCTGTTGCTACCGGAGATATCCTTCCCGTGCTTCTTCTTAAACTCGGCGATGAA 25624 Query 7438 GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 || | || | ||| ||||| || || || |||||||| || || || || || || Sbjct 25625 GTAGTTCACGACGCGCGAGTCGAAGTCCTCGCCGCCCAAGTGAGTGTCGCCAGCCGTGGC 25684 Query 7498 TTTGACTTCAAAGATACC--TCCT----TCAATGTTTAACAACGAAACATCAAACGTACC 7551 ||||| ||||||| || || || | | | | || ||||| ||||| || Sbjct 25685 CTTGACCTCAAAGACGCCGGAGCTGGGGTCGACAGTCAGGAGAGAGACATCGAACGTCCC 25744 Query 7552 ACCACCCAGGTCAAAAATGAG-----TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGA 7606 |||||| ||||| || ||||| |||| || | || | | | | | ||| || || Sbjct 25745 ACCACCGAGGTCGAAGATGAGGATGTTACGCTCCT-TCTTGGACGTAG-ACTTGTCAAGC 25802 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 || || ||||| || || || || || || || || || || || ||| || |||||| Sbjct 25803 CCATAGGCGATGGCAGCGGCAGTGGGCTCGTTGATGATGCGGAGGACGTTGAGCCCAGCA 25862 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | || | | ||| || | || |||| ||| ||||| || ||||| || Sbjct 25863 ATCGTGCCGGCGTTCTGCGTAGCCTTGCGCTGCGCATCAGAGAAGTACGCAGGGACGGTG 25922 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATA--CGATTCCGCGATATCTTTCATTTTGG 7784 |||| || || ||||| || || || || || || | |||||||| ||||| |||| Sbjct 25923 ACGATGGCCTCGGTGACCTTGTTGCCAAGGTAATCGCT--GGCGATATCCTTCATCTTGG 25980 Query 7785 TAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAA 7844 | || ||||| || || ||||| || | | ||| ||||| || || || | ||| Sbjct 25981 TGAGGACCATGGAGGAGATCTCCTCGGGAGTGAACGTCTTCGTCTCGCCCTTGTAGACAA 26040 Query 7845 CTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATAT 7904 | | ||| ||| || || | | ||| ||| ||||| ||| | | || | | Sbjct 26041 CCTGGATCTGGGGCTTCTCGTCGGGGCCGCAGATGACCTTGAACGGGAAGTGCTTGAGGT 26100 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 | | || || | |||| ||| | | ||||| | ||||| || || || | | Sbjct 26101 CTGCCTGCACTTCAGGGTCGTTGAACCTGCGACCGATCAAGCGCTTGGCGTCGAAGATGG 26160 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| | || || | ||| |||||||| || | ||| ||||| ||||| || | Sbjct 26161 TGTTCTCAGGATTGAGGGCGCACTGGTTCTTGGCGGAGTCGCCGATGAGACGCTCTGCA- 26219 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 ||||| || |||||||| || ||||| || || || || || || || || | Sbjct 26220 --TCCGTGAAGGCGACGTAGGAGGGGGTGGTGTACGCGCCCTGCTCATTGGCGATGATCT 26277 Query 8085 CTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 | || ||||| || | ||||| ||||| || || || ||||| Sbjct 26278 CCACTTTTTCGTTCTGATAAACGCCAACGCAGGAGTAAGTGGTTCC 26323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130902540760