Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498715.1_202013-11-25] 239 sequences; 10,703,894 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq12 132 6e-26 >seq12 Length=180243 Score = 132 bits (146), Expect = 6e-26 Identities = 723/1143 (63%), Gaps = 35/1143 (3%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| | || ||||| | ||||| |||||||| || ||||| || | || || || Sbjct 26341 GCTGTAGGCATCGACCTCGGAACCACTTACTCCTGCGTTGGCGTTTATCAGAACGAAAAA 26282 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACA--ACTCCATCGTACGTTGCCTTTA 195416 || ||||| ||| | ||||| || || |||||| || || || ||||| ||||| | Sbjct 26281 GTGGAGATCATCGCCAATGAGCAGGGCG--CGTACACCACCCCCTCCTACGTCGCCTTCA 26224 Query 195417 CAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCA 195476 | ||| || |||||| | || || |||| || || ||| || | || ||| | Sbjct 26223 CGGATGCAGAGCGTCTCATCGGCGACTCCGCCAAGAACCAGTGCGCCCTCAATCCTGAGA 26164 Query 195477 ATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAG 195536 | || |||| ||||| ||||| | || ||||||| ||| || |||| || | Sbjct 26163 ACACCATCTTCGACGCCAAGCGCTTGATCGGTCGCAGGTTCAACGACCCTGAAGTGCAGG 26104 Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCC-CGGTGTGGCTGATAAGCCTATGATT 195595 || | ||| ||| | | | ||| | || ||| | || ||||| ||| Sbjct 26103 CAGACCTCAAGCACTTCCCGT-TCAAGGTCATCTGCGGCCCCGACGAGAAGCCCCAGATC 26045 Query 195596 AATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655 | |||| | | || |||| ||| || ||||||| || || || || ||||| Sbjct 26044 CAGGTTGTCTACAAGGGCGAGACGAAGACGTTCACTCCCGAGGAGATCTCCTCCATGGTC 25985 Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 | | ||||||||||| | || || | | || || | || | || || | Sbjct 25984 CTCACCAAGATGAAGGATATCGCCAGCGATTACCTTGGCAACAAGGTCACCGAGGCCATC 25925 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 || || || ||||| |||||| |||| | || || |||| || || |||| | | Sbjct 25924 GTCACCGTCCCTGCGTACTTCTCTGATGCGCAGCGCAAGGCTACGCAGAACGCCGGCACG 25865 Query 195776 ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 ||||| || || ||| || | || ||||| || || || || ||||| || || ||| Sbjct 25864 ATTGCTGGGCTCAACGTCCTCCGCATCATCAACGAGCCCACTGCCGCTGCCATCGCCTAT 25805 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAA----AATGTATTGATCTTTGATCTCGGTGG 195891 || || |||||| | | | | |||| | || | | ||||| || |||||||| Sbjct 25804 GGGCTTGACAAGT-CTACGTCCAAGAAGGAGCGTAACATCCTCATCTTCGACCTCGGTGG 25746 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGA----AGGT--GGTATATTCGAAGTAAA 195945 ||| ||||| |||||||| || || | | | || || | || | || || || || Sbjct 25745 TGGGACGTTCGATGTCTCTCTCCTGACTGTCGACCCCAGCTCCGGCGTCTTTGAGGTCAA 25686 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA--TGCACGTCTT---CTC 196000 ||| || ||||| || ||||| | || || || || ||||| || |||| | || Sbjct 25685 GGCCACGGCTGGCGACACTCACTTGGGCGGCGAGGACTTCGACTCGCGCGTCGTGAACTA 25626 Query 196001 CGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAA---GAAAGATATTTCTGGAAATCCT 196057 | |||| | ||||| | ||||| | ||| ||||| || || | Sbjct 25625 CTTCAT-----CGCCGAGTT---TAAGAAGAAGCACGGGAAGGATATCTCCGGTAGCAAC 25574 Query 196058 AGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG 196117 ||||| | ||||| || | ||||| ||||| || || || || ||||| || || | Sbjct 25573 AGGGCGATGCGTCGTCTGCGCACTGCCTGTGAGCGCGCTAAGCGCACTCTTTCCTCGAGC 25514 Query 196118 GCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATT 196177 || | | ||||| || || | || || || || ||||||| || | || Sbjct 25513 CAGCAGGCGTCTATCGAGATAGAGTCTCTTTTCGAGGGCATAGACTTCTTCACTAACATC 25454 Query 196178 ACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTT 196237 || | || || || || | | ||| | || | ||||| |||| || ||| Sbjct 25453 ACAAGGGCGAAGTTCGAGGATCTTTGCATTGACCTCTTCCGTAAGTGCCTGGACCCCGTT 25394 Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297 || | || || || || | ||| | | ||| | || |||| || |||||||| Sbjct 25393 GATCGCGTTCTCCGCGATTCCAAGCTTGGCAAGAACGACGTCCATGACATCGTCCTTGTC 25334 Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357 || || || || ||||| |||||| | || |||||||| ||||||||| Sbjct 25333 GGTGGGTCCACACGTATCCCGAAGGTCCAGCAGATGCTCAGGGACTTCTTCAACGGCCGC 25274 Query 196358 GATTTAAACAA-AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGC 196416 || | | ||| |||| ||||||| || || || || || || || || | || ||||| Sbjct 25273 GAGCTCAGCAAGAACG-TCAACCCCGACGAGGCTGTCGCCTACGGGGCATCTGTCCAGGC 25215 Query 196417 TGC 196419 || Sbjct 25214 CGC 25212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860434636080