Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498715.1_202013-11-25] 239 sequences; 10,703,894 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 >seq2 Length=333263 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||| ||| |||||| ||| |||| | || Sbjct 298510 AGGACGAGGTGGAGCGTGGCATCCTTCTGGATGGAGTAGTCCTGGAGGGTGCGATTGTCC 298451 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||| |||||| || || ||||| ||| |||| | ||||||||||| Sbjct 298450 TCGAGCTGCTTGCCGGAGAAGATGAGGCGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 298391 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||| | ||| | || ||| ||| || |||| ||| | |||| Sbjct 298390 TGGATCTTCGCCTTGATGTTGTTTATGGTATCTGTGGGCTCAACCTCAAGGGTGACGGTC 298331 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 298330 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 298299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691851317941