Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498735.1_202013-11-25] 543 sequences; 12,009,633 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq79 122 2e-22 >seq79 Length=51337 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | |||| || || ||||| |||||| | Sbjct 15899 CCACCACGGAGGCGGAGGACGAGGTGGAGCGTGGCATCCTTCTGGATGGAATAGTCCTGG 15840 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||| || | || || || | |||||| || ||||| ||| |||| Sbjct 15839 AGGGTGCGGTTGTCCTCGAGCTGCTTGCCGGAGAAGATGAGGCGCTGCTGATCTGGTGGG 15780 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| ||||| || | ||| | ||| | ||| | | || || Sbjct 15779 ATTCCCTCCTTGTCCTGGATCTTCGCCTTGATGTTGTTTATGGTATCCGTGGGCTCAACC 15720 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 15719 TCAAGGGTGACGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 15673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646192923154