Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498735.1_202013-11-25] 543 sequences; 12,009,633 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq162 219 5e-52 seq3 89.7 7e-13 >seq162 Length=21526 Score = 219 bits (242), Expect = 5e-52 Identities = 739/1138 (65%), Gaps = 22/1138 (2%) Strand=Plus/Minus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 || ||| || ||||| | || ||||| ||||| ||||| || || || | |||| | Sbjct 10900 GAGGGCAGCCTGGACGGATGCTCCGTAGGCGACAGCCTCGTCAGGATTGACGTTTTTGCT 10841 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 || || ||||| || | ||| | ||| || || | |||||||| || ||||| Sbjct 10840 GAGCTCACGGCCGTTGAAGAAGTCCTTGAGCATCTGCTGCACCTTCGGGATACGCGTCGA 10781 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC-GATCTTTGAGTCTCGAAGTG 7199 ||||| || | ||||| |||| || | || | | | || ||| || || ||||| Sbjct 10780 CCCACCAACGAGGACGATGTCATGAACCT-CGTTCTTGCTGAGCTTGGAATCGCGAAGAA 10722 Query 7200 TTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTG 7259 || ||||| || | || || ||||| | ||| || || || ||||| || || Sbjct 10721 CGCGATCAACAGGATCGAGGCACTTGCGGAAGAGGTCAATGCAGAGATCCTCGAACTTTG 10662 Query 7260 CACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 | | || || || |||| || || || ||| | | || || ||||||||| | | Sbjct 10661 CCCTCGTGATATTGGTGAAGAAGTCCACACCCTCGAAGAGAGATTCTATTTCAATGCTCG 10602 Query 7320 TTTG-TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 || || | |||| || | || ||||| || ||||| || || || || | |||||| Sbjct 10601 CCTGCTGGC-TCGACGAAAGAGTGCGCTTGGCACGCTCGCAGGCAGTACGCAGACGACGC 10543 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 | || | | | || || ||||| || || || || ||||| | |||| Sbjct 10542 ATCGCCCTGTTGCTGCCTGAGATATCCTTGCCGTGCTTCTTCTTGAACTCAGCGATGAAG 10483 Query 7439 TGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 | | || | ||| || || || || ||||| | ||| ||||| || ||||| || Sbjct 10482 TAGTTCACGACGCGCGAGTCAAAGTCCTCGCCACCGAGGTGCGTATCACCAGCGGTAGCC 10423 Query 7499 TTGACTTCAAAGATACCTC--CT----TCAATGTTTAACAACGAAACATCAAACGTACCA 7552 ||||| || ||||| || || |||| ||| | || ||||||||||| || Sbjct 10422 TTGACCTCGAAGATGCCAGAGCTGGGGTCAACAGTTAGGAGGGAGACATCAAACGTTCCG 10363 Query 7553 CCACCCAGGTCAAAAATGAGTACGTT-CG---TATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || ||||| || || || | ||| || | || | || | || ||| ||||| || Sbjct 10362 CCGCCAAGGTCGAAGATAAGGATGTTACGCTCTTTCTTAGT-TGTGGACTTGTCGAGGCC 10304 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 || ||||| || || || || || || || || ||||| ||| ||| || |||||||| Sbjct 10303 ATAGGCGATGGCAGCAGCAGTCGGCTCGTTGATGATACGGAGAACGTTGAGCCCAGCAAT 10244 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 || | |||| | ||| || | || || | ||| || || || ||||| || || Sbjct 10243 CGTACCAGCATTCTGCGTGGCCTTACGCTGGGCGTCGGAGAAATACGCAGGGACAGTGAC 10184 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATA--CGATTCCGCGATATCTTTCATTTTGGTA 7786 || || || || || || || || || || || | || || || ||||| ||||| Sbjct 10183 GATGGCCTCAGTCACCTTGTTGCCAAGGTAGTCGCT--GGCAATGTCCTTCATCTTGGTG 10126 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACT 7846 || ||||| || || ||||| || | ||| ||||| || || || | |||| Sbjct 10125 AGGACCATGGAGGAGATCTCCTCGGGGCTGAACGTCTTCGTCTCGCCCTTGTACACAACC 10066 Query 7847 TCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCG 7906 | ||| || || || | | ||| ||| ||||| | | | | || | || Sbjct 10065 TGGATCTGCGGCTTCTCATCGGGCCCGCAGATGACCTTGAAGGGAAAGTGCTTGAGGTCT 10006 Query 7907 TCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTG 7966 | || |||| | || ||| ||| ||||| |||||||| ||||| || | ||| Sbjct 10005 GCCTGCACCTCGGGATCGTTGAACCTTCGGCCGATCAGACGCTTGGCATCGAAGATAGTG 9946 Query 7967 TTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTT 8026 || | ||||| | || |||||||| || | ||| ||||| ||||| || Sbjct 9945 TTCTCAGGGTTGAGTGCGCACTGGTTCTTAGCGGAGTCACCGATGAGACGCTC---TGCC 9889 Query 8027 TCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCT 8086 ||||| ||||||||||| || ||||| || | || || ||||| || ||||| ||| Sbjct 9888 TCCGTGAACGCGACGTAGGAGGGGGTGGTGTAAGCGCCCTGCTCGTTGGCGATAATCTCT 9829 Query 8087 ACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 || |||||||| | ||||| || || || || || || || | || || |||| Sbjct 9828 ACTTTCTCGTTTTGATATACGCCAACACAGGAGTAGGTGGTACCAAGGTCGATGCCGA 9771 >seq3 Length=173596 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/217 (71%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 ||||||||||| || || ||||||| | || || || ||||| || || |||| |||| Sbjct 160471 TTCTTATCGAGCCCATAGGCGATAGAGGACGAGGTAGGCTCATTGATGATGCGAACGACA 160530 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | || ||||| || | |||| | || || || || || ||||| || |||| Sbjct 160531 -TCAAGTCCAGCGAT-GCGGCCGGCGTCCTTGGTAGCAGAACGCTGCGAGTCAGAGAAGT 160588 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | || ||||| || ||||| || | |||| |||| |||||||| || || || Sbjct 160589 ATGC-GGGACGGTAACGACTGCCTTTGTGATCTTCTCGCCGAGATAGTCCTCTGCAATGG 160647 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||||||| ||||||||||| | ||||||||||| Sbjct 160648 TCTTCATTTTAGTAAGAACCATTGCGGAAATCTCTTC 160684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128489036120