Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498735.1_202013-11-25] 543 sequences; 12,009,633 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq162 192 8e-44 seq2 89.7 7e-13 >seq162 Length=21526 Score = 192 bits (212), Expect = 8e-44 Identities = 739/1147 (64%), Gaps = 43/1147 (4%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| | || ||||| | || || || ||||| |||||||| |||| ||||| || Sbjct 9767 GCTGTCGGCATCGACCTTGGTACCACCTACTCCTGTGTTGGCGTATATCAAAACGAGAAA 9826 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACA--ACTCCATCGTACGTTGCCTTTA 195416 |||||||||||| | || || || || | |||| || || || ||||| || || | Sbjct 9827 GTAGAGATTATCGCCAACGAGCAGGGCG--CTTACACCACCCCCTCCTACGTCGCGTTCA 9884 Query 195417 CAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCA 195476 | || || |||||| | || || |||| || || ||| || | |||||| | Sbjct 9885 CGGAGGCAGAGCGTCTCATCGGTGACTCCGCTAAGAACCAGTGCGCACTCAACCCTGAGA 9944 Query 195477 ATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAG 195536 | ||| |||| || || |||||||| || || || | ||| ||| | || || | Sbjct 9945 ACACTATCTTCGATGCCAAGCGTCTGATCGGCCGAAGGTTCAACGATCCCGAGGTGCAGG 10004 Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCC-CGGTGTGGCTGATAAGCCTATGATT 195595 || | ||| ||| | | | ||| | || ||| | ||| ||||| ||| Sbjct 10005 CAGACCTCAAGCACTTTCCCT-TCAAGGTCATCTGCGGGCCCGATGAGAAGCCGCAGATC 10063 Query 195596 AATGTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGT 195654 | |||| | | || |||| ||| || | || ||||| || || || || ||||| Sbjct 10064 CAGGTTGTGTACAAGGGCGAGACGAAGACGTTCAGC-CCCGAGGAGATCTCCTCCATGGT 10122 Query 195655 GTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGT 195714 | | ||||||||||| | ||| | | | || || | |||| || || | Sbjct 10123 CCTCACCAAGATGAAGGACATTGCCAGCGACTACCTTGGCAACAAGGTGACTGAGGCCAT 10182 Query 195715 TGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGC 195774 || ||||| ||||| || ||| || | || || |||| || || | |||| | | Sbjct 10183 CGTCACTGTCCCTGCGTATTTCTCCGACGCCCAGCGTAAGGCCACGCAGAATGCTGGTAC 10242 Query 195775 TATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 ||||| || || ||| ||| | || ||||| || || || || ||||| || || || Sbjct 10243 GATTGCTGGGCTCAACGTTCTCCGTATCATCAACGAGCCGACTGCTGCTGCCATCGCCTA 10302 Query 195835 TGGTCTGGACAAGA--ACAAGGACGAA-GATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 ||| || |||||| |||| | ||| || || | | ||||| || || || || Sbjct 10303 TGGCCTCGACAAGTCCACAACTAAGAAAGAGCGTAACATCCTTATCTTCGACCTTGGCGG 10362 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGA----AGGT--GGTATATTCGAAGTAAA 195945 || |||||||||||||| || || | | |||| || | || || ||||| || || Sbjct 10363 CGGAACGTTTGATGTCTCCCTCCTAACTGTTGACCCCAGCTCTGGCATCTTCGAGGTCAA 10422 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA--TGCACGTCTT---CTC 196000 |||||| ||||||||||| || || ||||| || || || || || |||| | || Sbjct 10423 GGCTACCGCTGGTGATACGCACCTCGGTGGCGAGGACTTTGACTCGCGCGTCGTGAACTA 10482 Query 196001 CGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAG------AAAGATATTTCTGGAAAT 196054 | |||| | ||||||| ||||| ||| || ||||| || || | Sbjct 10483 CTTCAT-----CGCTGAGTTC------AAGAAGAAGCACGGCAAGGATATCTCAGGCAGC 10531 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 ||||| | ||||| || | ||||| || || |||||||| || ||||| || || Sbjct 10532 AACAGGGCGATGCGTCGTCTGCGTACTGCCTGCGAGCGTGCCAAGCGCACTCTTTCGTCG 10591 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | || | | |||| || || || | || || || | ||||||| || | | Sbjct 10592 AGCCAGCAGGCGAGCATTGAAATAGAATCTCTCTTCGAGGGTGTGGACTTCTTCACCAAT 10651 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 || || | ||| || || || | | ||| | || | ||||| | || ||| Sbjct 10652 ATCACGAGGGCAAAGTTCGAGGATCTCTGCATTGACCTCTTCCGCAAGTGCCTCGATCCT 10711 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 ||||| | || ||||| || | ||| | ||| ||||| |||| || ||||| Sbjct 10712 GTTGATCGCGTTCTTCGCGATTCCAAGCTCAGCAAGAACGAGGTTCATGACATCGTCCTC 10771 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATA 196352 || || || || || ||||| |||||| | || ||||||| || || ||||||||| Sbjct 10772 GTTGGTGGGTCGACGCGTATCCCGAAGGTGCAGCAGATGC--TCAAGGACTTCTTCAACG 10829 Query 196353 ATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTC 196412 || | | ||||| |||| || || || || || || || || || |||| | Sbjct 10830 GCCGTGAGCTCAGCAAAAACGTCAATCCTGACGAGGCTGTCGCCTACGGAGCATCCGTCC 10889 Query 196413 AGGCTGC 196419 ||||||| Sbjct 10890 AGGCTGC 10896 >seq2 Length=204131 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/168 (72%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 182938 ACTTTCCC-CGAAGTGGAAAGACGCCGTAATGATCCCTTCCAACAACA------GAGAGG 182990 ||||| || ||||| |||||||| ||||||| | | | ||| | || |||| Sbjct 5140 ACTTTGCCTCGAAGGGGAAAGACTCCGTAATACTTCTTACCATCCTCAATGCTCGAGATC 5081 Query 182991 CCAGCGACAGCGAGTGTCTTTGCCGAGTCACCCTCTGTCACGATGAGTGTACACTTAGAA 183050 ||| ||||||| || | ||| || ||||||||||| |||| ||| || |||||||| || Sbjct 5080 CCATCGACAGCAAGAGCCTTAGCAGAGTCACCCTCAGTCAAGATTAGAGTACACTTGGAC 5021 Query 183051 GATTGGGCTGTCCCAGCTTTGTTTGCGTCATCAAGCTTGGGAATACCA 183098 |||| ||||| || | |||| |||||||| || || || ||| Sbjct 5020 GATTCTCGGGTCCCTGCAGCGATTGCATCATCAAGTTTAGGGATTCCA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657857934758960