Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498735.1_202013-11-25] 543 sequences; 12,009,633 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq162 98.7 3e-15 >seq162 Length=21526 Score = 98.7 bits (108), Expect = 3e-15 Identities = 243/366 (66%), Gaps = 11/366 (3%) Strand=Plus/Plus Query 349532 cccGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | || |||||||| ||||| | || | Sbjct 10100 CCCGAGGAGATCTCCTCCATGGTCCTCACCAAGATGAAGGACATTGCCAGCGACTACCTT 10159 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || ||||| || | | ||||| || || ||||| || ||||||||| Sbjct 10160 GGCAACAAGGTGACTGAGGCCATCGTCACTGTCCCTGCGTATTTCTCCGACGCCCAGCGT 10219 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || | ||||||| | ||||| ||| | || ||||| | || || || || Sbjct 10220 AAGGCCACGCAGAATGCTGGTACGATTGCTGGGCTCAACGTTCTCCGTATCATCAACGAG 10279 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaa----aa 349767 || |||||||| || || || ||||| || || || | || |||||| | || Sbjct 10280 CCGACTGCTGCTGCCATCGCCTATGGCCTCGACAAGTCCACA-ACTAAGAAAGAGCGTAA 10338 Query 349768 TATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG- 349826 || ||||| || || | || || || || |||||||| || || ||||| |||| Sbjct 10339 CATCCTTATCTTCGACCTTGGCGGCGGAACGTTTGATGTCTCCCTCCTAACTGTTGACCC 10398 Query 349827 -AG----GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || || || || || || || || || ||||||||||| || || ||||| || || Sbjct 10399 CAGCTCTGGCATCTTCGAGGTCAAGGCTACCGCTGGTGATACGCACCTCGGTGGCGAGGA 10458 Query 349882 TTTTGA 349887 ||||| Sbjct 10459 CTTTGA 10464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243858091029