Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giardia_20intestinalis_20[genbank_20GCA_5F000498735.1_202013-11-25] 543 sequences; 12,009,633 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq79 143 3e-29 >seq79 Length=51337 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| | || |||||||||||| | Sbjct 15673 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCGTCACCCTTGAGGTTGAGCCCACG 15732 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 15733 GATACCATAAACAACATCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAG 15792 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || | || ||||| |||||||| | || ||||| |||||| Sbjct 15793 CAGCGCCTCATCTTCTCCGGCAAGCAGCTCGAGGACAACCGCACCCTCCAGGACTATTCC 15852 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||| || || || ||| | || || || ||||| Sbjct 15853 ATCCAGAAGGATGCCACGCTCCACCTCGTCCTCCGCCTCCGTGGTGG 15899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306529018160