Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq391 116 8e-21 seq523 111 3e-19 seq591 105 1e-17 seq279 93.3 9e-14 seq922 86.0 1e-11 seq914 86.0 1e-11 seq798 86.0 1e-11 seq796 86.0 1e-11 seq755 86.0 1e-11 >seq391 Length=1319552 Score = 116 bits (128), Expect = 8e-21 Identities = 295/439 (67%), Gaps = 15/439 (3%) Strand=Plus/Minus Query 281583 GACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACA 281642 |||||||| || ||||| || || ||||| || |||| | || || | ||| Sbjct 228677 GACCAACCCGTACCAATCCCGTCAGAGCCATTCACTAAAACCATTGGAATTACAGGGCAG 228618 Query 281643 TAACATTCTGGTTCAATTTTATCA--CCATCATCATACAAATACTTCAGAAGGTTATCAT 281700 || ||||| || ||||| |||| ||||| || | || ||||||| || ||| | Sbjct 228617 TACCATTCAGGCTCAATC--ATCATTCCATCTTCTTCCAGGTACTTCAAAACAGGATCGT 228560 Query 281701 CTGTATCGACGAAAACCTG-TCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCA 281759 | ||| |||| || ||| || | || || || |||||||| ||||| | | Sbjct 228559 CCAGCTCGGAGAAAG--TGCTCGTGTGATGGGTGCCAACTTTGTGAAGATGTACCTAGAA 228502 Query 281760 CTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAG 281819 || |||||| || || ||||| | | ||||||||||| | || | | | || Sbjct 228501 GATGCTGCGTCTTTTCCGCCTTGCAGGCGAGTTCCAAACTGACCAGCGGGGACTAGCAAG 228442 Query 281820 TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGAT 281879 || ||||||| |||||| | | ||| || || ||| || ||| ||||||||| Sbjct 228441 TTTGCGTTATTGGAACCGACGAAGTTCTGTGCAAGACCGACAATGGTCGACTGAAGCGAC 228382 Query 281880 ACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTC 281939 | || || ||||| || ||| ||||| || ||||| ||| || ||| || ||||| Sbjct 228381 ATTTCGCCATGGTGGTACGCGGCATGTTC-GCGACATACCCAGCGAGCTGAGCAACCTTG 228323 Query 281940 ACGTCTGAT---GTCAAGTTGCGTTTGAAAGC--GCAATATAATACTTTTCGTTGAGAAG 281994 | |||||| || | || || ||| |||| |||| | | ||||| ||||| |||| Sbjct 228322 ATATCTGATCGCGTTAGCTTTCGCTTG-AAGCATGCAA-AGAGCACTTTGCGTTGGGAAG 228265 Query 281995 GCTTGAAACCATCAACGAC 282013 |||| || |||||||| || Sbjct 228264 GCTTCAACCCATCAACTAC 228246 Score = 105 bits (116), Expect = 1e-17 Identities = 251/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGACTGGGAAAACAG 282452 |||||||| ||||| |||| || ||| || || ||||||| | ||||| || || | Sbjct 227862 ACGATAGGGGTGATAAACTCCTGCAAAAATCCAGGAATTTTCAACAGACTAGGCCAAAAA 227803 Query 282453 CTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 282512 || ||| ||||| || |||||||| ||||| | ||||| ||| |||| | Sbjct 227802 TGATCGAAGAAGTTGATCACAAGACCTTTGATGTGCGACCCGTCGTGATCTTGATCGGCC 227743 Query 282513 ATGATCATCACATGACCGTATCTCAGAG-----AAGAAGTGTCTTTG---TACACTTTAC 282564 || || | || || || ||||| ||| | | ||||||| || ||||| | Sbjct 227742 ATAATGAGAACGTGGCCATATCTGAGACTTTTCACG--GTGTCTTCAGAATAGACTTTGC 227685 Query 282565 CGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTG 282624 || ||| | ||| | ||||| || || | | ||||||| |||| | |||| ||| Sbjct 227684 CGTGTTGCAAGCCAAGAATTTTCTTTAGAGAGTTGATTTCGGCGTTGTCCATGAT--TTG 227627 Query 282625 CCACAGAT--GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCT 282682 | | || ||||| || ||||||| ||| || || || || || || ||||| Sbjct 227626 TTTGTGCTTGGCTTCGCGTACATTCAGCAGCTTTCCTCGCAGCGGGAAGACGCCATAGTA 227567 Query 282683 CTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGT 282742 || | || || || || ||||| | |||||| || | | || || ||||||||||| Sbjct 227566 GTCTCTTCCAACGACAGAAAGTCCAGAAATTGCTAGGGCTTTGGCCGAGTCTCCCTCCGT 227507 Query 282743 CAAGATGAGAGTACAC 282758 | ||||| |||||| Sbjct 227506 TAGTATGAGTGTACAC 227491 >seq523 Length=1527182 Score = 111 bits (122), Expect = 3e-19 Identities = 292/438 (67%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 281583 GACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACA 281642 |||||||| || ||||| || || ||||| || |||| | || || | ||| Sbjct 3667 GACCAACCCGTACCAATCCCGTCAGAGCCATTCACTAAAACCAT-GGAATTACAGGGCAG 3725 Query 281643 TAACATTCTGGTTCAATTTTATCA--CCATCATCATACAAATACTTCAGAAGGTTATCAT 281700 || ||||| || ||||| |||| ||||| || | || ||||||| || ||| | Sbjct 3726 TACCATTCAGGCTCAATC--ATCATTCCATCTTCTTCCAGGTACTTCAAAACAGGATCGT 3783 Query 281701 CTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCAC 281760 | ||| ||| | ||| || | || || || |||||||| ||||| | | Sbjct 3784 CCAGCTCGGAGAATAGTGCTCGTGTGATGGGTGCCAACTTTGTGAAGATGTACCTAGAAG 3843 Query 281761 TCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGT 281820 || |||||| || || ||||| | | ||||||||||| | || | | | ||| Sbjct 3844 ATGCTGCGTCTTTTCCGCCTTGCAGGCGAGTTCCAAACTGACCAGCGGGGACTAGCAAGT 3903 Query 281821 TAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATA 281880 | ||||||| |||||| | | ||| || || ||| || ||| ||||||||| | Sbjct 3904 TTGCGTTATTGGAACCGACGAAGTTCTGTGCAAGACCGACAATGGTCGACTGAAGCGACA 3963 Query 281881 CCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 || || ||||| || ||| ||||| || || || ||| || ||| || ||||| | Sbjct 3964 TTTCGCCATGGTGGTACGCGGCATGTTCAGCGACGTACCCAGCGAGCTGAGCAACCTTGA 4023 Query 281941 CGTCTGAT---GTCAAGTTGCGTTTGAAAGC--GCAATATAATACTTTTCGTTGAGAAGG 281995 |||||| || | || || ||| |||| |||| | | ||||| ||||| ||||| Sbjct 4024 TATCTGATCGCGTTAGCTTTCGCTTG-AAGCATGCAA-AGAGCACTTTGCGTTGGGAAGG 4081 Query 281996 CTTGAAACCATCAACGAC 282013 ||| || |||||||| || Sbjct 4082 CTTCAACCCATCAACTAC 4099 Score = 105 bits (116), Expect = 1e-17 Identities = 251/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGACTGGGAAAACAG 282452 |||||||| ||||| |||| || ||| || || ||||||| | ||||| || || | Sbjct 4485 ACGATAGGGGTGATAAACTCCTGCAAAAATCCAGGAATTTTCAACAGACTAGGCCAAAAA 4544 Query 282453 CTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 282512 || ||| ||||| || |||||||| ||||| | ||||| ||| |||| | Sbjct 4545 TGATCGAAGAAGTTGATCACAAGACCTTTGATGTGCGACCCGTCGTGATCTTGATCGGCC 4604 Query 282513 ATGATCATCACATGACCGTATCTCAGAG-----AAGAAGTGTCTTTG---TACACTTTAC 282564 || || | || || || ||||| ||| | | ||||||| || ||||| | Sbjct 4605 ATAATGAGAACGTGGCCATATCTGAGACTTTTCACG--GTGTCTTCAGAATAGACTTTGC 4662 Query 282565 CGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTG 282624 || ||| | ||| | ||||| || || | | ||||||| |||| | |||| ||| Sbjct 4663 CGTGTTGCAAGCCAAGAATTTTCTTTAGGGAGTTGATTTCGGCGTTGTCCATGAT--TTG 4720 Query 282625 CCACAGAT--GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCT 282682 | | || ||||| || ||||||| ||| || || || || || || ||||| Sbjct 4721 TTTGTGCTTGGCTTCGCGTACATTCAGCAGCTTTCCTCGCAGCGGGAAGACGCCATAGTA 4780 Query 282683 CTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGT 282742 || | || || || || ||||| | |||||| || | | || || ||||||||||| Sbjct 4781 GTCTCTTCCAACGACAGAAAGTCCAGAAATTGCTAGGGCTTTGGCCGAGTCTCCCTCCGT 4840 Query 282743 CAAGATGAGAGTACAC 282758 | ||||| |||||| Sbjct 4841 TAGTATGAGTGTACAC 4856 >seq591 Length=826125 Score = 105 bits (116), Expect = 1e-17 Identities = 251/368 (68%), Gaps = 11/368 (3%) Strand=Plus/Plus Query 319304 CCTTCGAAGTGATACCCTCGAGGA-ACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTC 319362 |||| || ||||||||||| ||| |||||| ||||| || || || || ||| ||| Sbjct 36795 CCTTTGATGTGATACCCTCAAGGTTACCCGGTTTCGGG-AATTTGAACTTGAGCTTGGTC 36853 Query 319363 TCGGTAAGGGCGTAGTAACTCGCTGA-TTCGGGACGCTTCTTCACGAACTCGGACAGATT 319421 | | | || |||| || ||||| || |||||| || ||||| | || ||| Sbjct 36854 TGCTTCATTTCGAAGTAGGATTTTGCCTTCGGAAC-CTTCTTTACAAACTCTGTCAAATT 36912 Query 319422 TCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGC 319481 ||||| | | ||||| || || || ||| |||||||| ||| || ||| Sbjct 36913 GCCCTTATGCAACTTCAATTTGAGATT---TTCAATCTGGATAATGTGGGTACACACATT 36969 Query 319482 GTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAG 319541 || | | || |||||||||||| | | || || ||||| || | | | ||| Sbjct 36970 GTTCAAAAGTCCCTTGTCGTGTGACACGACAATGCTCGTCACGTCTTTCAAGCCGTTCAA 37029 Query 319542 GTATTCAATCAA-CCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCTCGTCAAGA 319599 ||| || |||| |||| ||||||| ||| ||| | ||||||||||||||| ||||| Sbjct 37030 GTAATC-TTCAACCCACTTCACGTT-GACGACATCCAAATGGTTGGTCGGCTCATCAAGC 37087 Query 319600 AGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 319659 | || | | ||| || | ||||| ||||| || |||||||| ||||| ||| || Sbjct 37088 AAGAGGATATCTGCATTTTGAAGCATAGCACGAGCTAGAGCGAGCTTCATACGCCATCCA 37147 Query 319660 CCGGAAAG 319667 || ||||| Sbjct 37148 CCCGAAAG 37155 >seq279 Length=54669 Score = 93.3 bits (102), Expect = 9e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 292107 CAATCACTTCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCA 292166 ||||||| |||||||| ||| ||| | | || || || ||| | || || |||| Sbjct 33437 CAATCACATCCTTGCGGGTCGTATTGGCGTTCACGATGGCCGAGATCAAATTCTGTGGCA 33378 Query 292167 CTCCCTCGAAATTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAAC 292226 | | |||| |||| ||||||||| || || || || | ||||| | ||||||| Sbjct 33377 CAGCGGAATAATTGGCCACCAGTTGCTTTGTGTCTTTGGGCAGACAATAGCCACCATAAC 33318 Query 292227 CGAACGAAGGGTTTGAGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGA 292286 |||| || || || ||| || | || || || |||||| || || ||| | Sbjct 33317 CGAAAGACGGATTGTTGTAGCCATCCCCGATACGGCCATCCAGACAGACCCCGCGAATAA 33258 Query 292287 TTTCTTTCGCATTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAA 292346 | | | | | || |||| | ||| ||| | | ||| ||||| || || || |||| Sbjct 33257 TCTGCTCAGAGTCCAGCCCGTCATGCATGGCGTAAGAATCAAGTTCATTAAAATAGGCAA 33198 Query 292347 CTCGCATTGCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTC 292395 | ||||| || ||||| || || || || ||||||| || |||||||| Sbjct 33197 CCCGCATCGCGAGATATGTATTGGAAAAGAGTTTGATCGCTTCGGCTTC 33149 >seq922 Length=426388 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 365950 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 365891 >seq914 Length=813895 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 603783 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 603842 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 631253 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 631194 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 644659 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 644600 >seq798 Length=1844297 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 887386 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 887327 >seq796 Length=1945337 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 1865802 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 1865743 >seq755 Length=936044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 869894 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 869835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057808779565490