Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq708 86.0 5e-12 seq191 84.2 2e-11 >seq708 Length=363590 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 102036 TATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCAT 102095 |||| || || || || || | ||| ||||||||||||||||| ||||| ||||| || | Sbjct 200573 TATACTCCGCGCCAAAGTGTCGCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTT 200514 Query 102096 CTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGT 102155 | | || | ||||| | || ||||| | | |||||||| | |||||||| Sbjct 200513 CCCGATC-TGTAAACCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTC 200455 Query 102156 GCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTT 102215 | || || ||| ||| |||| ||||| ||| | |||||||| || || | Sbjct 200454 GGACCCCCTTCTCTGTCAGCAGTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCT 200395 Query 102216 CTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | || ||||||| | |||||| |||| ||| || || | ||| || || Sbjct 200394 CCTCCGCAACACC-CGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAA 200347 >seq191 Length=259989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 102036 TATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCAT 102095 |||| || || || || || | ||| |||||||||||||| || ||||| ||||| || | Sbjct 120956 TATACTCCGCGCCAAAGTGTCGCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTT 121015 Query 102096 CTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGT 102155 | | || ||| || | || ||||| | | |||||||| | |||||||| Sbjct 121016 CCCGATCTGTAAACCCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTC 121075 Query 102156 GCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTT 102215 | || || ||| ||| |||| ||||| ||| | |||||||| || || | Sbjct 121076 GGACCCCCTTCTCTGTCAGCAATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCT 121135 Query 102216 CTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | || ||||||| | |||||| |||| ||| || || | ||| || || Sbjct 121136 CCTCCGCAACACCCCGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAA 121184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361246255712873